Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   M9H69_RS05355 Genome accession   NZ_CP097843
Coordinates   1034951..1038604 (-) Length   1217 a.a.
NCBI ID   WP_250314996.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1029951..1043604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS05330 (M9H69_05330) - 1031336..1032115 (-) 780 WP_250316151.1 ribonuclease HII -
  M9H69_RS05335 (M9H69_05335) ylqF 1032102..1032953 (-) 852 WP_250314994.1 ribosome biogenesis GTPase YlqF -
  M9H69_RS05340 (M9H69_05340) - 1033166..1033381 (+) 216 WP_001098941.1 hypothetical protein -
  M9H69_RS05345 (M9H69_05345) - 1033365..1033721 (+) 357 WP_042902272.1 type II toxin-antitoxin system PemK/MazF family toxin -
  M9H69_RS05350 (M9H69_05350) - 1033755..1034933 (-) 1179 WP_250314995.1 hypothetical protein -
  M9H69_RS05355 (M9H69_05355) rexA 1034951..1038604 (-) 3654 WP_250314996.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  M9H69_RS05360 (M9H69_05360) rexB 1038601..1041876 (-) 3276 WP_250314997.1 ATP-dependent nuclease subunit B Machinery gene
  M9H69_RS05365 (M9H69_05365) - 1041998..1042807 (+) 810 WP_250314998.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 1217 a.a.        Molecular weight: 140600.21 Da        Isoelectric Point: 5.1594

>NTDB_id=596607 M9H69_RS05355 WP_250314996.1 1034951..1038604(-) (rexA) [Streptococcus oralis strain HP01]
MKPISFLTEEEIQKLQEAEANSSKEQKKTAEQIEAIYTSGQNILVSASAGSGKTFVMAERILDQLARGVEISQLFISTFT
VKAATELKERLEKKISQQIQKTDDVDLKQHLGRQLAELPNAAIGTMDSFTQKFLGKHGYLIDIAPNFRILQNESEQLLLK
NEVFHQVFEDHYQGENKESFSRLVKNFAGRGKDERGLRQQVYKIYDFLQSTSSPKKWLSNSFLKGFEEADFVIEKDKLTE
QIKQALWDLESFLRYHLDNDAKEFPKATYLENVLLVLDEIGSLNQESDSQAYQAVLTRVVAISKEKNGRALANSSRKADL
KPLADAYNEERKAQFAKLGQLADQITILDYQERYHGDTWELSKTFQTFMSDFVEAYRERKRQENAFEFADISHYTIEILE
NFPQVRKAYQERFHEVMVDEYQDTNHIQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNEKFQRYAQNPKEGKLIL
LKENFRSSLEVLSATNDVFGRLMDQEVGEINYDSMHQLVFANTKLTPNPDNKAEFLLYDKDDSGQEEEESQTETKLTGEM
RLVIKEILKLHREKGVVFKEIALLTSSRSRNDQILLALSEYGIPVKTDGEQNNYLQSLEVQVMLDTLRVIHNPLQDYALV
ALMKSPMFSFDEDELARLSLQKVEDKVQENLYEKLLHAQKQETELKDLIHTALAEKLNQFMDILDSWRLYAKTHSLYDLI
WKIYNDRFYYDYVGALPNGPARQANLYALALRADQFEKSNFKGLSRFIRMIDQVLEAQHDLASVAVAPPKDAVELMTIHK
SKGLEFPYVFILNMDQDFNKQDSMSDVILSRQNGLGVKYISKVETGAVEAHYPKTIKLSIPSLTYIQNEKELQLASYSEQ
MRLLYVAMTRAERKLYLVGKGSREKLEAKEYPAANNGKLDSNTRLQARNFQDWIWAITKVFAKDNLNFSYRFVGEDQLTR
EAIGELENKSPLQDSSQADNRQSETIKEALEMLKEVEVYNTLHRAAIELPSVQTPSQIKKFYEPVMDMEGVQIANQTQST
EKKISFDLPDFSTKEKVTGSEIGSATHELMQRIDLSQQPTLATLEETLQQVQTSQAVRNKINLSKILAFFDTALGQEILA
NTDYIYREQPFSMLKRDEKSQENFVVRGILDGYLLYQDRIVLFDYKTDRYDEPSQLIDRYRSQLALYGEALSRAYSIQNI
EKYLILLGKDEVQVVKV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=596607 M9H69_RS05355 WP_250314996.1 1034951..1038604(-) (rexA) [Streptococcus oralis strain HP01]
ATGAAGCCCATTTCCTTTTTAACTGAGGAAGAGATTCAAAAATTGCAAGAAGCAGAAGCGAATTCGAGCAAGGAACAGAA
GAAAACAGCCGAGCAAATCGAAGCCATCTACACTTCTGGTCAAAATATCCTCGTTTCAGCGTCTGCTGGTTCTGGGAAAA
CCTTTGTCATGGCAGAGCGCATTCTGGACCAATTAGCCCGTGGTGTCGAAATTTCTCAACTCTTTATCTCGACCTTTACC
GTCAAGGCTGCCACTGAACTAAAAGAACGCTTGGAGAAAAAAATCAGCCAGCAAATCCAAAAAACCGATGATGTTGATCT
CAAACAACACTTGGGAAGACAGTTGGCAGAACTACCAAACGCGGCCATCGGAACCATGGACTCCTTCACACAAAAGTTCC
TCGGCAAACATGGCTATCTGATTGATATCGCACCGAACTTCCGTATTCTACAAAATGAAAGTGAACAGTTACTCTTAAAA
AATGAGGTTTTTCATCAGGTTTTTGAAGATCATTACCAAGGTGAAAATAAAGAGAGCTTTAGTCGATTGGTCAAGAACTT
TGCTGGACGTGGCAAGGATGAACGAGGTCTGCGCCAGCAAGTCTACAAAATCTATGATTTCCTCCAATCCACCAGTAGCC
CCAAAAAATGGTTGAGTAACTCTTTCCTCAAAGGGTTTGAAGAAGCTGACTTTGTAATTGAAAAAGACAAATTAACTGAG
CAAATCAAACAGGCGCTATGGGATTTGGAAAGTTTCCTCCGTTATCATCTGGATAACGATGCCAAGGAGTTTCCAAAAGC
TACCTATTTAGAAAATGTGCTGTTGGTTCTGGATGAAATTGGTTCCTTAAATCAAGAGTCCGATAGCCAGGCTTATCAAG
CAGTGCTTACGCGTGTTGTCGCCATCTCGAAAGAAAAAAATGGTAGAGCTCTAGCTAATTCTAGTCGTAAGGCCGATTTG
AAACCACTGGCTGATGCCTACAACGAAGAAAGAAAGGCCCAGTTTGCTAAACTTGGACAACTAGCAGACCAGATAACAAT
TCTCGACTATCAAGAACGTTATCATGGAGACACCTGGGAGTTATCTAAAACTTTCCAAACATTTATGAGTGATTTTGTGG
AGGCTTATCGTGAACGTAAACGCCAGGAAAATGCCTTTGAGTTTGCTGATATCAGCCATTACACCATTGAAATTTTAGAG
AATTTCCCACAAGTCCGCAAGGCTTATCAGGAACGATTCCACGAAGTCATGGTCGATGAGTATCAGGATACCAACCACAT
TCAAGAACGGATGCTGGAATTGTTGTCTAATGGCCACAATCGCTTTATGGTGGGGGATATCAAGCAGTCCATCTACCGTT
TCCGTCAGGCAGACCCGCAGATTTTCAATGAAAAATTTCAACGCTATGCACAAAATCCTAAAGAAGGCAAGTTGATTCTC
CTCAAGGAGAATTTCCGTAGCAGTTTAGAAGTGTTGTCAGCAACCAATGATGTTTTTGGACGCCTTATGGACCAAGAGGT
CGGCGAAATCAACTATGATAGCATGCACCAGCTTGTTTTTGCCAATACCAAACTAACTCCCAATCCAGACAACAAGGCAG
AATTTCTCCTCTACGATAAGGACGACAGCGGACAAGAGGAGGAAGAGAGCCAAACAGAAACAAAACTCACAGGAGAAATG
CGCCTAGTTATCAAGGAAATCTTGAAGCTCCATCGAGAGAAAGGTGTAGTCTTTAAGGAAATTGCCCTTTTGACCTCTAG
CCGCAGTCGAAATGACCAGATTCTCCTCGCCCTGTCTGAGTACGGGATTCCTGTTAAAACCGACGGCGAACAAAACAACT
ACCTTCAATCCCTAGAAGTGCAAGTCATGTTAGACACCCTTCGTGTCATCCACAATCCCCTGCAAGACTATGCCTTGGTT
GCCCTTATGAAGTCCCCAATGTTTAGCTTTGATGAGGACGAGTTGGCACGCTTGTCTCTTCAGAAAGTAGAAGATAAAGT
CCAAGAAAATCTATATGAGAAACTGCTTCATGCTCAAAAACAGGAAACTGAACTGAAGGACTTAATTCACACAGCTTTAG
CGGAAAAATTAAATCAGTTCATGGATATTTTGGATTCTTGGCGCTTGTATGCCAAAACTCACTCCCTTTATGATTTGATT
TGGAAGATTTATAACGACCGTTTTTATTATGATTATGTTGGAGCCTTGCCTAACGGTCCTGCTAGACAAGCCAATCTCTA
TGCTTTAGCTTTGAGAGCAGACCAGTTTGAAAAGAGTAATTTCAAGGGCTTGTCGCGTTTTATACGTATGATTGACCAAG
TCCTAGAAGCCCAGCATGACCTTGCAAGCGTGGCTGTCGCACCGCCAAAAGATGCCGTGGAACTCATGACTATTCACAAG
AGCAAAGGGCTGGAATTTCCTTATGTCTTTATCCTCAACATGGATCAGGACTTCAACAAGCAAGACTCGATGTCAGACGT
CATTCTCAGCCGTCAAAATGGGCTTGGTGTCAAATACATTTCTAAGGTGGAAACAGGAGCAGTGGAAGCACACTATCCTA
AAACCATCAAACTCTCCATTCCTAGTCTAACTTATATCCAGAATGAGAAAGAACTGCAATTGGCTAGTTATTCAGAGCAG
ATGCGTCTGCTGTATGTTGCCATGACGAGAGCTGAGAGAAAGCTTTATCTTGTCGGTAAGGGTTCTCGTGAAAAGCTGGA
AGCCAAGGAATACCCAGCAGCAAATAACGGAAAATTAGATAGCAATACCAGACTGCAAGCAAGAAATTTCCAAGATTGGA
TCTGGGCTATTACTAAAGTATTTGCCAAGGACAATCTCAACTTTAGCTATCGTTTTGTTGGTGAAGATCAGCTGACCAGA
GAAGCTATCGGAGAGTTGGAAAACAAGAGTCCTCTACAAGATAGCTCTCAAGCTGACAACCGCCAGTCTGAAACGATTAA
AGAAGCCCTTGAAATGCTGAAAGAGGTGGAAGTTTATAATACTCTTCACCGCGCAGCCATTGAATTACCAAGTGTTCAAA
CTCCAAGTCAAATCAAGAAATTCTACGAACCCGTTATGGATATGGAGGGTGTTCAAATTGCTAACCAAACTCAATCAACT
GAGAAGAAAATCAGCTTTGATTTGCCAGATTTTTCAACTAAAGAAAAAGTCACTGGATCTGAGATTGGTAGTGCCACCCA
TGAACTGATGCAGAGAATTGACCTCAGTCAGCAACCAACACTTGCCACTCTGGAAGAAACTCTGCAACAAGTTCAAACTA
GTCAAGCTGTCAGAAACAAGATTAATCTTTCTAAAATCCTAGCTTTCTTTGATACAGCACTTGGTCAGGAAATTCTCGCT
AATACTGACTATATCTATCGTGAGCAACCTTTTTCCATGCTCAAACGAGATGAAAAGAGCCAAGAGAACTTTGTGGTTCG
TGGAATTCTAGATGGGTATTTACTCTATCAAGACCGAATTGTCCTCTTTGACTATAAGACAGACCGTTACGATGAACCAA
GTCAACTCATAGACCGCTATCGTAGTCAGTTAGCTCTATATGGAGAAGCCTTATCACGAGCCTATTCGATTCAAAACATA
GAAAAATACTTGATTTTACTCGGTAAAGACGAGGTTCAAGTTGTAAAAGTATAA

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C)

(479-897)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-469)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1055-1194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

91.044

100

0.91