Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K5K99_RS05510 Genome accession   NZ_CP081461
Coordinates   1035227..1035697 (+) Length   156 a.a.
NCBI ID   WP_227259259.1    Uniprot ID   -
Organism   Vagococcus fluvialis strain 36B2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1030227..1040697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5K99_RS14745 - 1030415..1030546 (+) 132 WP_264478146.1 hypothetical protein -
  K5K99_RS05460 (K5K99_05445) - 1030534..1030755 (+) 222 WP_227259250.1 hypothetical protein -
  K5K99_RS05465 (K5K99_05450) - 1030729..1031124 (-) 396 WP_227259251.1 hypothetical protein -
  K5K99_RS05470 (K5K99_05455) - 1031338..1031541 (+) 204 WP_207058583.1 hypothetical protein -
  K5K99_RS05475 (K5K99_05460) - 1031531..1031902 (+) 372 WP_227259252.1 hypothetical protein -
  K5K99_RS05480 (K5K99_05465) - 1031916..1032191 (+) 276 WP_227259253.1 hypothetical protein -
  K5K99_RS05485 (K5K99_05470) - 1032188..1032532 (+) 345 WP_227259254.1 YopX family protein -
  K5K99_RS05490 (K5K99_05475) - 1032613..1032918 (+) 306 WP_227259255.1 hypothetical protein -
  K5K99_RS05495 (K5K99_05480) - 1032875..1033765 (+) 891 WP_227259256.1 hypothetical protein -
  K5K99_RS05500 (K5K99_05485) - 1033722..1034513 (+) 792 WP_227259257.1 PD-(D/E)XK nuclease-like domain-containing protein -
  K5K99_RS05505 (K5K99_05490) - 1034526..1035230 (+) 705 WP_227259258.1 putative HNHc nuclease -
  K5K99_RS05510 (K5K99_05495) ssb 1035227..1035697 (+) 471 WP_227259259.1 single-stranded DNA-binding protein Machinery gene
  K5K99_RS05515 - 1035711..1036412 (+) 702 WP_227259260.1 replisome organizer -
  K5K99_RS05520 (K5K99_05505) - 1036381..1037214 (+) 834 WP_227259261.1 ATP-binding protein -
  K5K99_RS05525 (K5K99_05510) - 1037234..1037434 (+) 201 WP_227259262.1 hypothetical protein -
  K5K99_RS05530 (K5K99_05515) - 1037427..1037597 (+) 171 WP_227259263.1 hypothetical protein -
  K5K99_RS05535 (K5K99_05520) - 1037590..1037943 (+) 354 WP_227259264.1 hypothetical protein -
  K5K99_RS05540 (K5K99_05525) - 1037944..1038372 (+) 429 WP_227259265.1 RusA family crossover junction endodeoxyribonuclease -
  K5K99_RS05545 (K5K99_05530) - 1038365..1039897 (+) 1533 WP_227259266.1 DUF4942 domain-containing protein -
  K5K99_RS05550 (K5K99_05535) - 1039900..1040604 (+) 705 WP_227259313.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17586.32 Da        Isoelectric Point: 5.7469

>NTDB_id=596593 K5K99_RS05510 WP_227259259.1 1035227..1035697(+) (ssb) [Vagococcus fluvialis strain 36B2]
MINNFILQGRFVKDLGLRYTSSGKAVASSTVASQRNFKNGNGEYESDFIPVVIWGKTAETVANHFKKGNEILLVGRIQTR
NYENEQGQKIYITEMIVESFSFTSGNRDNSQNNQQQNNQSFHQESMPGMDKRGFNNDSDPFGNSSQIDISSQDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=596593 K5K99_RS05510 WP_227259259.1 1035227..1035697(+) (ssb) [Vagococcus fluvialis strain 36B2]
ATGATAAACAATTTTATTTTACAAGGTAGATTCGTAAAAGATTTAGGCCTTAGATATACAAGTAGTGGTAAAGCAGTAGC
TTCATCAACTGTAGCTTCACAACGTAATTTTAAGAATGGTAATGGAGAGTATGAGTCAGATTTTATCCCAGTTGTTATTT
GGGGAAAAACAGCTGAAACAGTAGCTAATCATTTTAAAAAAGGTAATGAAATTTTATTAGTTGGTCGTATTCAAACTAGA
AATTACGAGAATGAACAAGGTCAAAAAATCTATATCACTGAAATGATAGTTGAGTCATTTAGTTTTACTAGTGGTAATCG
TGATAATAGTCAAAATAACCAACAACAAAATAACCAGTCGTTCCACCAAGAAAGTATGCCAGGAATGGATAAAAGAGGTT
TTAACAATGATAGCGATCCATTCGGAAATAGTAGCCAGATTGATATAAGCTCGCAAGACTTACCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

44.118

100

0.481
  ssbA Bacillus subtilis subsp. subtilis str. 168

41.436

100

0.481