Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   K4756_RS12205 Genome accession   NZ_CP081458
Coordinates   2379626..2380696 (-) Length   356 a.a.
NCBI ID   WP_015483431.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain ps4060     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2374626..2385696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4756_RS12160 (K4756_12090) tapA 2375107..2375868 (-) 762 WP_015384085.1 amyloid fiber anchoring/assembly protein TapA -
  K4756_RS12165 (K4756_12095) yqzG 2376138..2376464 (+) 327 WP_015384086.1 YqzG/YhdC family protein -
  K4756_RS12170 (K4756_12100) spoIITA 2376506..2376685 (-) 180 WP_003230176.1 YqzE family protein -
  K4756_RS12175 (K4756_12105) comGG 2376757..2377131 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  K4756_RS12180 (K4756_12110) comGF 2377132..2377515 (-) 384 WP_015384087.1 ComG operon protein ComGF Machinery gene
  K4756_RS12185 (K4756_12115) comGE 2377541..2377888 (-) 348 WP_015384088.1 ComG operon protein 5 Machinery gene
  K4756_RS12190 (K4756_12120) comGD 2377872..2378303 (-) 432 WP_015384089.1 comG operon protein ComGD Machinery gene
  K4756_RS12195 (K4756_12125) comGC 2378293..2378589 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  K4756_RS12200 (K4756_12130) comGB 2378603..2379639 (-) 1037 Protein_2357 comG operon protein ComGB -
  K4756_RS12205 (K4756_12135) comGA 2379626..2380696 (-) 1071 WP_015483431.1 competence protein ComGA Machinery gene
  K4756_RS12210 (K4756_12140) corA 2381106..2382059 (-) 954 WP_015483432.1 magnesium transporter CorA -
  K4756_RS12215 (K4756_12145) yqhB 2382202..2383530 (+) 1329 WP_003230150.1 hemolysin family protein -
  K4756_RS12220 (K4756_12150) rsbRD 2383583..2384419 (-) 837 WP_015384093.1 RsbT co-antagonist protein RsbRD -
  K4756_RS12230 (K4756_12160) mgsR 2384643..2385023 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  K4756_RS12235 (K4756_12165) yqgY 2385255..2385500 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=596511 K4756_RS12205 WP_015483431.1 2379626..2380696(-) (comGA) [Bacillus subtilis subsp. subtilis strain ps4060]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYITTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=596511 K4756_RS12205 WP_015483431.1 2379626..2380696(-) (comGA) [Bacillus subtilis subsp. subtilis strain ps4060]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATCGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGTGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCATTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCGACTGGTTCAGGGAAGACTACCACATTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGATCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTGACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATCGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTAGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGCCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGAAAAGGAATTGCGCTCGGCTATATAACGACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

99.719

100

0.997
  pilF Thermus thermophilus HB27

36.827

99.157

0.365