Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M9O74_RS10370 Genome accession   NZ_CP097719
Coordinates   2144353..2145009 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain MS1679     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2139353..2150009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9O74_RS10340 (M9O74_10335) dcyD 2140233..2141219 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  M9O74_RS10345 (M9O74_10340) tcyL 2141234..2141902 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  M9O74_RS10350 (M9O74_10345) tcyN 2141899..2142651 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  M9O74_RS10355 (M9O74_10350) sdiA 2142881..2143603 (+) 723 WP_001154273.1 transcriptional regulator SdiA -
  M9O74_RS10360 (M9O74_10355) yecF 2143670..2143894 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  M9O74_RS10365 (M9O74_10360) yecU 2143881..2144057 (-) 177 WP_000590344.1 protein YecU -
  M9O74_RS26520 - 2144095..2144211 (-) 117 WP_001302039.1 hypothetical protein -
  M9O74_RS10370 (M9O74_10365) letA 2144353..2145009 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  M9O74_RS10375 (M9O74_10370) uvrC 2145006..2146838 (+) 1833 WP_001283427.1 excinuclease ABC subunit UvrC Machinery gene
  M9O74_RS10380 (M9O74_10375) pgsA 2146895..2147443 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M9O74_RS10400 (M9O74_10395) yecA 2148093..2148758 (+) 666 WP_000847885.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=596189 M9O74_RS10370 WP_000611335.1 2144353..2145009(+) (letA) [Escherichia coli strain MS1679]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=596189 M9O74_RS10370 WP_000611335.1 2144353..2145009(+) (letA) [Escherichia coli strain MS1679]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486