Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J58_RS03540 Genome accession   NZ_AP018772
Coordinates   698091..698705 (+) Length   204 a.a.
NCBI ID   WP_005686751.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-1 isolate 15H02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 693091..703705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J58_RS03515 (CHBNIII1_06800) - 693508..694026 (-) 519 WP_005649040.1 isoprenylcysteine carboxyl methyltransferase family protein -
  K6J58_RS03520 (CHBNIII1_06810) aspS 694245..696011 (+) 1767 WP_005686757.1 aspartate--tRNA ligase -
  K6J58_RS03525 (CHBNIII1_06820) nudB 696033..696509 (+) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  K6J58_RS03530 (CHBNIII1_06830) - 696669..697409 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J58_RS03535 (CHBNIII1_06840) ruvC 697456..698028 (+) 573 WP_005686753.1 crossover junction endodeoxyribonuclease RuvC -
  K6J58_RS03540 (CHBNIII1_06850) ruvA 698091..698705 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J58_RS03545 (CHBNIII1_06860) ruvB 698713..699720 (+) 1008 WP_221255143.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J58_RS03550 (CHBNIII1_06870) - 699772..700059 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  K6J58_RS03555 (CHBNIII1_06880) xerD 700232..701125 (-) 894 WP_005686747.1 site-specific tyrosine recombinase XerD -
  K6J58_RS03560 (CHBNIII1_06890) - 701155..702321 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  K6J58_RS03565 (CHBNIII1_06900) proC 702321..703136 (-) 816 WP_005686744.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22575.32 Da        Isoelectric Point: 6.5030

>NTDB_id=59608 K6J58_RS03540 WP_005686751.1 698091..698705(+) (ruvA) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPVEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59608 K6J58_RS03540 WP_005686751.1 698091..698705(+) (ruvA) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACAACTTTATTCACCCATCTTGTTGTTC
GTGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGCGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGTAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

RuvA, C-terminal domain (RuvA_C)

(161-202)

Helix-hairpin-helix domain (HHH_5)

(72-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373

Multiple sequence alignment