Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvB   Type   Machinery gene
Locus tag   K6J58_RS03545 Genome accession   NZ_AP018772
Coordinates   698713..699720 (+) Length   335 a.a.
NCBI ID   WP_221255143.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-1 isolate 15H02     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 693713..704720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J58_RS03520 (CHBNIII1_06810) aspS 694245..696011 (+) 1767 WP_005686757.1 aspartate--tRNA ligase -
  K6J58_RS03525 (CHBNIII1_06820) nudB 696033..696509 (+) 477 WP_005686755.1 dihydroneopterin triphosphate diphosphatase -
  K6J58_RS03530 (CHBNIII1_06830) - 696669..697409 (+) 741 WP_005649034.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J58_RS03535 (CHBNIII1_06840) ruvC 697456..698028 (+) 573 WP_005686753.1 crossover junction endodeoxyribonuclease RuvC -
  K6J58_RS03540 (CHBNIII1_06850) ruvA 698091..698705 (+) 615 WP_005686751.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J58_RS03545 (CHBNIII1_06860) ruvB 698713..699720 (+) 1008 WP_221255143.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J58_RS03550 (CHBNIII1_06870) - 699772..700059 (-) 288 WP_005659998.1 DUF5339 domain-containing protein -
  K6J58_RS03555 (CHBNIII1_06880) xerD 700232..701125 (-) 894 WP_005686747.1 site-specific tyrosine recombinase XerD -
  K6J58_RS03560 (CHBNIII1_06890) - 701155..702321 (-) 1167 WP_005660002.1 3-phenylpropionate MFS transporter -
  K6J58_RS03565 (CHBNIII1_06900) proC 702321..703136 (-) 816 WP_005686744.1 pyrroline-5-carboxylate reductase -
  K6J58_RS03570 (CHBNIII1_06910) rdgC 703202..704109 (+) 908 Protein_695 recombination-associated protein RdgC -
  K6J58_RS03575 (CHBNIII1_06920) ruvX 704159..704578 (-) 420 WP_005648994.1 Holliday junction resolvase RuvX -

Sequence

Protein


Download         Length: 335 a.a.        Molecular weight: 37004.39 Da        Isoelectric Point: 4.9330

>NTDB_id=59609 K6J58_RS03545 WP_221255143.1 698713..699720(+) (ruvB) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVRKQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSAGCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
VISVEVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=59609 K6J58_RS03545 WP_221255143.1 698713..699720(+) (ruvB) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGATTGAAGCAGATAGAATTATTAGCGGGCAAGCTAAGGTTGATGAAGATGTTATTGACCGTGCTATTCGTCCTAAACT
ATTAGCGGATTATGTTGGGCAGCCGCAAGTACGCAAGCAGATGGATATCTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCTGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTGTTAGAAAAAGCGGGCGATTTGGCTGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGCGAAGGACCCGCTGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGCGCG
ACCACTAGAGCGGGTTCTTTGACTTCTCCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAGTTTTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGGCTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCAGATGTGCGTAATGGGGGA
GTAATTTCTGTAGAGGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGACGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTAGGGCTAGATAATCTTGCTGCTGCAATTGGCGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGTTTTTTACAAAGAACGCCGAGAGGTCGTATTGCA
ACATCACAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG

Domains

Predicted by InterProScan.

Holliday junction DNA helicase RuvB P-loop domain (RuvB_N)

(23-181)

RuvB AAA lid domain (AAA_lid_4)

(184-257)

RuvB C-terminal winged helix domain (WHD_RuvB)

(259-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvB Bacillus subtilis subsp. subtilis str. 168

61.774

97.612

0.603
  ruvB Streptococcus pneumoniae TIGR4

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae R6

57.975

97.313

0.564
  ruvB Streptococcus pneumoniae D39

57.975

97.313

0.564
  ruvB Helicobacter pylori 26695

54.313

93.433

0.507
  ruvB Synechocystis sp. PCC 6803

55.016

92.239

0.507

Multiple sequence alignment