Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   K4L72_RS17495 Genome accession   NZ_CP081304
Coordinates   3536774..3537463 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain CL-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3531774..3542463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4L72_RS17460 (K4L72_17460) - 3531972..3532454 (-) 483 WP_003151394.1 flagellar protein FlgN -
  K4L72_RS17465 (K4L72_17465) flgM 3532469..3532735 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  K4L72_RS17470 (K4L72_17470) - 3532805..3533224 (-) 420 WP_057080259.1 TIGR03826 family flagellar region protein -
  K4L72_RS17475 (K4L72_17475) comFC 3533298..3533987 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  K4L72_RS17480 (K4L72_17480) - 3533993..3534277 (-) 285 WP_057080260.1 late competence development ComFB family protein -
  K4L72_RS17485 (K4L72_17485) comFA 3534335..3535720 (-) 1386 WP_024085865.1 DEAD/DEAH box helicase Machinery gene
  K4L72_RS17490 (K4L72_17490) - 3535828..3536676 (-) 849 WP_024085866.1 DegV family protein -
  K4L72_RS17495 (K4L72_17495) degU 3536774..3537463 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  K4L72_RS17500 (K4L72_17500) degS 3537540..3538703 (-) 1164 WP_079004916.1 two-component sensor histidine kinase DegS Regulator
  K4L72_RS17505 (K4L72_17505) - 3538926..3539573 (+) 648 WP_003151384.1 YigZ family protein -
  K4L72_RS17510 (K4L72_17510) - 3539578..3540792 (+) 1215 WP_079004917.1 LCP family protein -
  K4L72_RS17515 (K4L72_17515) - 3540882..3541958 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=595930 K4L72_RS17495 WP_003219701.1 3536774..3537463(-) (degU) [Bacillus velezensis strain CL-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=595930 K4L72_RS17495 WP_003219701.1 3536774..3537463(-) (degU) [Bacillus velezensis strain CL-4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1