Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LOCK900_RS00050 Genome accession   NC_021723
Coordinates   10924..11514 (+) Length   196 a.a.
NCBI ID   WP_005709832.1    Uniprot ID   A0A0J6XXP0
Organism   Lacticaseibacillus rhamnosus LOCK900     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5924..16514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LOCK900_RS00030 (LOCK900_0007) gyrA 6540..9152 (+) 2613 WP_005709828.1 DNA gyrase subunit A -
  LOCK900_RS00035 (LOCK900_0008) deoC 9226..9930 (-) 705 WP_005709830.1 deoxyribose-phosphate aldolase -
  LOCK900_RS00040 (LOCK900_0009) ssb 10040..10471 (+) 432 WP_005709831.1 single-stranded DNA-binding protein -
  LOCK900_RS00045 (LOCK900_0010) rpsF 10598..10894 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  LOCK900_RS00050 (LOCK900_0011) ssb 10924..11514 (+) 591 WP_005709832.1 single-stranded DNA-binding protein Machinery gene
  LOCK900_RS00055 (LOCK900_0012) rpsR 11605..11841 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  LOCK900_RS00060 (LOCK900_0013) - 12142..12648 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  LOCK900_RS00065 (LOCK900_0014) - 12994..14472 (+) 1479 WP_005709833.1 cytochrome ubiquinol oxidase subunit I -
  LOCK900_RS00070 (LOCK900_0015) cydB 14465..15484 (+) 1020 WP_005709834.1 cytochrome d ubiquinol oxidase subunit II -
  LOCK900_RS00075 (LOCK900_0016) - 15524..15718 (+) 195 WP_005685667.1 hypothetical protein -
  LOCK900_RS13455 (LOCK900_0017) - 15797..16222 (-) 426 WP_005709835.1 CPBP family intramembrane metalloprotease -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 20932.66 Da        Isoelectric Point: 4.9056

>NTDB_id=59588 LOCK900_RS00050 WP_005709832.1 10924..11514(+) (ssb) [Lacticaseibacillus rhamnosus LOCK900]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=59588 LOCK900_RS00050 WP_005709832.1 10924..11514(+) (ssb) [Lacticaseibacillus rhamnosus LOCK900]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCGGCGGAGAATTTCGCAAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GTAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J6XXP0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.749

100

0.505

Multiple sequence alignment