Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   M8286_RS09955 Genome accession   NZ_CP097577
Coordinates   2062561..2063655 (+) Length   364 a.a.
NCBI ID   WP_275601108.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2057561..2068655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS09930 (M8286_10080) pgsA 2058073..2058612 (-) 540 WP_014638849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M8286_RS09935 (M8286_10085) rodZ 2058632..2059486 (-) 855 WP_015647575.1 cytoskeleton protein RodZ -
  M8286_RS09940 (M8286_10090) - 2059568..2060851 (-) 1284 WP_275601106.1 pitrilysin family protein -
  M8286_RS09945 (M8286_10095) - 2060848..2062101 (-) 1254 WP_275601107.1 pitrilysin family protein -
  M8286_RS09950 (M8286_10100) yaaA 2062175..2062558 (+) 384 WP_002936175.1 S4 domain-containing protein YaaA -
  M8286_RS09955 (M8286_10105) recF 2062561..2063655 (+) 1095 WP_275601108.1 DNA replication/repair protein RecF Machinery gene
  M8286_RS09960 (M8286_10110) guaB 2063738..2065219 (-) 1482 WP_024379541.1 IMP dehydrogenase -
  M8286_RS09965 (M8286_10115) trpS 2065451..2066476 (-) 1026 WP_014736602.1 tryptophan--tRNA ligase -
  M8286_RS09970 (M8286_10120) - 2066831..2067703 (+) 873 WP_275601109.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42148.30 Da        Isoelectric Point: 8.3829

>NTDB_id=595758 M8286_RS09955 WP_275601108.1 2062561..2063655(+) (recF) [Streptococcus suis strain 3112]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYALALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQDISDKKEELTIEYQSSIKFTTPVNLIDNFLT
ELKKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSIKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=595758 M8286_RS09955 WP_275601108.1 2062561..2063655(+) (recF) [Streptococcus suis strain 3112]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGCTTTAGCTTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTGCTCCAATTTCAAGAAAAAGAGCTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGATAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTAAGAAGAAAGT
TCATCGATGTCGAGCTAGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGATATTTCAGATA
AGAAGGAGGAACTAACTATTGAATATCAATCCTCAATTAAGTTTACTACTCCTGTCAATTTAATTGACAATTTCTTGACA
GAACTAAAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGGGATGATGTAGCTTTCTT
TATAAATGGGATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTATCAATCAAACTGGCAGAAATCG
AGCTTATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGACGATGTTATGAGTGAGCTAGATAATAACCGCCAA
ATCAAACTACTAGAAACTATTACGGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACACAAGCTACC
AGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCGGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

42.973

100

0.437