Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M8286_RS03030 Genome accession   NZ_CP097577
Coordinates   612689..613285 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain 3112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 607689..618285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS03015 (M8286_03035) micB 607911..609260 (+) 1350 WP_024379730.1 cell wall metabolism sensor histidine kinase VicK Regulator
  M8286_RS03020 (M8286_03040) vicX 609267..610070 (+) 804 WP_024407014.1 MBL fold metallo-hydrolase Regulator
  M8286_RS03025 (M8286_03045) pbp2b 610605..612680 (+) 2076 WP_275601433.1 penicillin-binding protein PBP2B -
  M8286_RS03030 (M8286_03050) recR 612689..613285 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  M8286_RS03035 (M8286_03055) - 613390..614436 (+) 1047 WP_358639055.1 D-alanine--D-alanine ligase -
  M8286_RS03040 (M8286_03060) - 614524..614904 (+) 381 WP_275601435.1 OsmC family protein -
  M8286_RS03045 (M8286_03065) - 614905..615981 (+) 1077 WP_275601436.1 ABC transporter permease -
  M8286_RS03050 (M8286_03070) - 615991..616659 (+) 669 WP_024407021.1 ABC transporter ATP-binding protein -
  M8286_RS03055 (M8286_03075) murF 616871..618232 (+) 1362 WP_275601437.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=595705 M8286_RS03030 WP_002935848.1 612689..613285(+) (recR) [Streptococcus suis strain 3112]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=595705 M8286_RS03030 WP_002935848.1 612689..613285(+) (recR) [Streptococcus suis strain 3112]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTACACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCGAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49