Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K3169_RS09195 Genome accession   NZ_CP081201
Coordinates   2069577..2070251 (+) Length   224 a.a.
NCBI ID   WP_027898764.1    Uniprot ID   A0A1Y3P4I3
Organism   Pseudomonas phytophila strain ICMP 23753     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2064577..2075251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3169_RS09175 (K3169_09135) scpB 2064608..2065375 (+) 768 WP_231675718.1 SMC-Scp complex subunit ScpB -
  K3169_RS09180 (K3169_09140) - 2065478..2065669 (+) 192 WP_027898767.1 DUF1289 domain-containing protein -
  K3169_RS09185 (K3169_09145) rluB 2065867..2067123 (+) 1257 WP_099269606.1 23S rRNA pseudouridine(2605) synthase RluB -
  K3169_RS09190 (K3169_09150) comA 2067279..2069495 (+) 2217 WP_263271120.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3169_RS09195 (K3169_09155) exbB 2069577..2070251 (+) 675 WP_027898764.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3169_RS09200 (K3169_09160) - 2070248..2070679 (+) 432 WP_027898763.1 ExbD/TolR family protein -
  K3169_RS09205 (K3169_09165) lpxK 2070679..2071674 (+) 996 WP_231665717.1 tetraacyldisaccharide 4'-kinase -
  K3169_RS09210 (K3169_09170) - 2071692..2071877 (+) 186 WP_027898761.1 Trm112 family protein -
  K3169_RS09215 (K3169_09175) kdsB 2071874..2072638 (+) 765 WP_099269609.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3169_RS09220 (K3169_09180) murB 2072635..2073654 (+) 1020 WP_263271124.1 UDP-N-acetylmuramate dehydrogenase -
  K3169_RS09225 (K3169_09185) - 2073839..2074432 (+) 594 WP_263271126.1 NTP transferase domain-containing protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24414.64 Da        Isoelectric Point: 7.9064

>NTDB_id=595636 K3169_RS09195 WP_027898764.1 2069577..2070251(+) (exbB) [Pseudomonas phytophila strain ICMP 23753]
MWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRITPPHLVGQVWQWIQDKKLDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNATGNTANASVLAGGISKALICTA
SGLIVAIPAIFFHRYLQSRVDELVVGMEQEAIKLVEVVQGDREVDLNDPKIDLKSQARGEGRKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=595636 K3169_RS09195 WP_027898764.1 2069577..2070251(+) (exbB) [Pseudomonas phytophila strain ICMP 23753]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATTGCTGCGGTCGGCATTATCAT
CGAGCGCCTCTGGACCCTTCGTGCTAGCCGCATTACCCCGCCGCATCTGGTAGGGCAAGTCTGGCAATGGATTCAGGACA
AGAAACTCGACAAGGAAAAACTCAAGCAACTGCGTGCAGATTCCCCTCTGGGTGAAATCCTTGCTGCAGGCCTGGCCAAT
TCACGGCATGGCCGCGAAATCATGAAAGAGTGCATTGAAGAGGCTGCCGCACGGGTCATTCATGATCTGGAGCGCTACCT
CAGTGCGCTTGGCTCCATCGCTGCCATGGCCCCTTTGCTGGGCCTGCTGGGTACGGTGTTGGGCATGATCGACATTTTTG
GTTCGTTCAACGCCACCGGCAATACAGCCAATGCCTCGGTACTGGCTGGCGGTATTTCCAAAGCGCTGATCTGTACGGCG
TCGGGCCTGATCGTCGCGATTCCGGCGATCTTCTTCCACCGTTACCTGCAAAGCCGGGTCGACGAGCTGGTGGTCGGCAT
GGAACAGGAAGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGCGAAGTCGACCTGAACGATCCGAAAATTGACCTCA
AGTCGCAGGCCCGGGGCGAGGGTCGTAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y3P4I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.75

0.741