Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   K3819_RS24860 Genome accession   NZ_CP081200
Coordinates   5480992..5482581 (+) Length   529 a.a.
NCBI ID   WP_221399732.1    Uniprot ID   -
Organism   Pseudomonas sp. 3-2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5475992..5487581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3819_RS24840 (K3819_24840) pgeF 5477793..5478515 (-) 723 WP_085612624.1 peptidoglycan editing factor PgeF -
  K3819_RS24845 (K3819_24845) rluD 5478512..5479474 (-) 963 WP_221398121.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K3819_RS24850 (K3819_24850) - 5479627..5480643 (+) 1017 WP_007959566.1 outer membrane protein assembly factor BamD -
  K3819_RS24855 (K3819_24855) - 5480769..5481002 (+) 234 WP_039771683.1 PP0621 family protein -
  K3819_RS24860 (K3819_24860) pilS 5480992..5482581 (+) 1590 WP_221399732.1 ATP-binding protein Regulator
  K3819_RS24865 (K3819_24865) pilR 5482578..5483924 (+) 1347 WP_221398122.1 sigma-54 dependent transcriptional regulator Regulator
  K3819_RS24870 (K3819_24870) thiO 5484082..5485182 (-) 1101 WP_221398123.1 glycine oxidase ThiO -
  K3819_RS24875 (K3819_24875) - 5485240..5485641 (-) 402 WP_221398124.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58676.34 Da        Isoelectric Point: 6.3910

>NTDB_id=595608 K3819_RS24860 WP_221399732.1 5480992..5482581(+) (pilS) [Pseudomonas sp. 3-2]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDEWLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVDSAIGNLLIVSVAISNTLLRRRIGLLIAAIATLGIVGLSFLLSFSHSLSANDYLQAGTLG
ALCFAASLLVQGLMRRLEVSENLAEQRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSAKTLLGQTHLEGDLID
EHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVDESREQAGER
QHIHLQIGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEIWLTLSIDPESTLAVLEVQDNGPGVPLDQQVHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=595608 K3819_RS24860 WP_221399732.1 5480992..5482581(+) (pilS) [Pseudomonas sp. 3-2]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGTCTCTATCATCTGTACCGTTTAAGTGT
CGGCATCACCCTGGTGTTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTGGCTGCGCA
ATGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTGGTGTTCCTCGAGAATATCCGCCGCCCAGCCCAGTTGTTC
GGCCTGGCACTGGTCGACATTCTGCTGCTGTGCGGCGTGTTCTATGCGGCCGGCGGTGTGGACAGTGCGATTGGCAACTT
GCTGATCGTTTCGGTGGCCATCAGCAACACCTTGCTGCGACGACGTATCGGCTTGCTGATCGCCGCCATCGCCACCCTGG
GCATTGTCGGGCTCAGCTTTCTGCTGAGTTTCAGCCATTCCCTGAGCGCCAACGACTATCTGCAGGCCGGCACCCTCGGC
GCTCTATGCTTCGCGGCGTCATTGCTGGTGCAAGGATTGATGCGCCGTCTCGAAGTCAGTGAGAACCTGGCCGAGCAGCG
CGCCAGCGAAGTGGTGGGGCTCGAAGCCCTCAATGCGCTGATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACG
AACAGCGCCGGGTACAACTGGCCAATCACAGCGCCAAGACCCTGCTGGGCCAGACACATCTTGAAGGCGACCTGATCGAC
GAGCACTCGAGCGCATTGGTCGAACGCCTGCAACTGTGGCTGAACAACCCGACCCTGCGCCCGCAAAGCCTGAAAATCGC
CGGCAACGGCCTGGAGCTGCAACCGAGTTTCATCGCCCTGGAACAGAGTCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAGCAATTGAAACTCGCCGCGCTGGGCCGGCTGACTGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCGCCGCAACGGCTGGATCTCAAGCCGTGGCTGGAGCAGTTCGTCGACGAGAGCCGCGAACAGGCCGGCGAGCGC
CAGCACATTCATCTGCAAATCGGTCCGGGGGATTTTCGCACCCTGATGGATCCCGGCCAGCTCACGCAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGTGCCCTTTTGCACGACCCGGCCGAGATCTGGCTGACGCTATCCATCGACCCCG
AGAGCACGCTGGCCGTGCTCGAAGTGCAAGACAACGGCCCCGGCGTGCCGCTCGATCAACAGGTTCACCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAAGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605