Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   K3819_RS21505 Genome accession   NZ_CP081200
Coordinates   4760289..4760924 (-) Length   211 a.a.
NCBI ID   WP_163976130.1    Uniprot ID   -
Organism   Pseudomonas sp. 3-2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4755289..4765924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3819_RS21470 (K3819_21470) - 4755685..4756155 (-) 471 WP_039770687.1 (2Fe-2S)-binding protein -
  K3819_RS21475 (K3819_21475) murB 4756403..4757422 (-) 1020 WP_221397904.1 UDP-N-acetylmuramate dehydrogenase -
  K3819_RS21480 (K3819_21480) - 4757419..4757883 (-) 465 WP_064598568.1 low molecular weight protein-tyrosine-phosphatase -
  K3819_RS21485 (K3819_21485) kdsB 4757883..4758647 (-) 765 WP_221397905.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  K3819_RS21490 (K3819_21490) - 4758644..4758829 (-) 186 WP_003179363.1 Trm112 family protein -
  K3819_RS21495 (K3819_21495) lpxK 4758854..4759864 (-) 1011 WP_221397906.1 tetraacyldisaccharide 4'-kinase -
  K3819_RS21500 (K3819_21500) - 4759864..4760292 (-) 429 WP_039770694.1 biopolymer transporter ExbD -
  K3819_RS21505 (K3819_21505) exbB 4760289..4760924 (-) 636 WP_163976130.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  K3819_RS21510 (K3819_21510) comA 4761003..4763246 (-) 2244 WP_221397907.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K3819_RS21515 (K3819_21515) - 4763383..4763901 (+) 519 WP_085612113.1 DUF2062 domain-containing protein -
  K3819_RS21520 (K3819_21520) - 4763956..4764735 (-) 780 WP_085612112.1 ABC transporter permease -
  K3819_RS21525 (K3819_21525) - 4764732..4765664 (-) 933 WP_221397908.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22826.97 Da        Isoelectric Point: 7.3615

>NTDB_id=595600 K3819_RS21505 WP_163976130.1 4760289..4760924(-) (exbB) [Pseudomonas sp. 3-2]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPAVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=595600 K3819_RS21505 WP_163976130.1 4760289..4760924(-) (exbB) [Pseudomonas sp. 3-2]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAGCGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCTGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGGGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCGGCCGCCCGGGTCATCCACGAGCTGGAACGCTACGT
CAACGCGCTGGGCACCATTGCCGCCATGTCGCCGTTGCTGGGTCTGCTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GTGCCTTCACCGGCTCCGGCATGACCACCAATGCTGCGGTGCTGGCCGGCGGTATTTCCAAGGCGCTGATCACTACCGCT
GCGGGCCTGATGGTCGGTATTCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTGGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848