Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M8789_RS07985 Genome accession   NZ_CP097571
Coordinates   1651874..1652560 (-) Length   228 a.a.
NCBI ID   WP_078064626.1    Uniprot ID   -
Organism   Staphylococcus aureus strain V40     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1646874..1657560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8789_RS07965 (M8789_07965) rpsT 1647788..1648039 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  M8789_RS07970 (M8789_07970) holA 1648084..1649058 (-) 975 WP_001282572.1 DNA polymerase III subunit delta -
  M8789_RS07975 (M8789_07975) comEC 1649115..1651316 (-) 2202 WP_041201403.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M8789_RS07980 (M8789_07980) - 1651321..1651782 (-) 462 WP_000439693.1 ComE operon protein 2 -
  M8789_RS07985 (M8789_07985) comEA 1651874..1652560 (-) 687 WP_078064626.1 ComEA family DNA-binding protein Machinery gene
  M8789_RS07990 (M8789_07990) - 1652600..1653316 (-) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  M8789_RS07995 (M8789_07995) rsfS 1653319..1653672 (-) 354 WP_001088020.1 ribosome silencing factor -
  M8789_RS08000 (M8789_08000) yqeK 1653673..1654257 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  M8789_RS08005 (M8789_08005) nadD 1654247..1654816 (-) 570 WP_000725161.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  M8789_RS08010 (M8789_08010) yhbY 1654819..1655109 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  M8789_RS08015 (M8789_08015) aroE 1655113..1655919 (-) 807 WP_000666747.1 shikimate dehydrogenase -
  M8789_RS08020 (M8789_08020) yqeH 1655933..1657033 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25748.41 Da        Isoelectric Point: 9.5275

>NTDB_id=595536 M8789_RS07985 WP_078064626.1 1651874..1652560(-) (comEA) [Staphylococcus aureus strain V40]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLSDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVDLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=595536 M8789_RS07985 WP_078064626.1 1651874..1652560(-) (comEA) [Staphylococcus aureus strain V40]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCCGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTATCAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGAAACACAAATAATACTAAAGTAGATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.797

99.561

0.974
  comEA Staphylococcus aureus N315

97.797

99.561

0.974