Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K3369_RS26995 Genome accession   NZ_CP081178
Coordinates   5959435..5960775 (+) Length   446 a.a.
NCBI ID   WP_221107415.1    Uniprot ID   -
Organism   Pseudomonas mandelii strain KGI_MA19     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5954435..5965775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3369_RS26970 (K3369_26970) pgeF 5954655..5955374 (-) 720 WP_221107414.1 peptidoglycan editing factor PgeF -
  K3369_RS26975 (K3369_26975) rluD 5955371..5956333 (-) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K3369_RS26980 (K3369_26980) - 5956485..5957507 (+) 1023 WP_010467556.1 outer membrane protein assembly factor BamD -
  K3369_RS26985 (K3369_26985) - 5957620..5957853 (+) 234 WP_010467554.1 PP0621 family protein -
  K3369_RS26990 (K3369_26990) pilS 5957843..5959432 (+) 1590 WP_010467553.1 PAS domain-containing sensor histidine kinase Regulator
  K3369_RS26995 (K3369_26995) pilR 5959435..5960775 (+) 1341 WP_221107415.1 sigma-54 dependent transcriptional regulator Regulator
  K3369_RS27000 (K3369_27000) thiO 5960904..5962004 (-) 1101 WP_010467551.1 glycine oxidase ThiO -
  K3369_RS27005 (K3369_27005) - 5962063..5962464 (-) 402 WP_221107416.1 type IV pilin protein -
  K3369_RS27010 (K3369_27010) - 5962479..5965589 (-) 3111 WP_221107417.1 pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49801.22 Da        Isoelectric Point: 6.4102

>NTDB_id=595500 K3369_RS26995 WP_221107415.1 5959435..5960775(+) (pilR) [Pseudomonas mandelii strain KGI_MA19]
MSPRPKVLIVDDEPDIRELLEITLGRMKLDTYSARNLGEAQALLMRETFDLCLTDMRLPDGTGLELVQYTQQRYPHVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGDSLPMRNLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRANQPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAIRSVGGQQEMVVDVRILCATHKDLDAEVTAERFRQDLYYRLNVIELRVPPLRERRDDIEPLASH
VLKRLAAGSGQPAAKLHPLALDALKSYRFPGNVRELENVLERAYTLCEDKQIEASDLRLAEGNCTAESGVPDLTQIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=595500 K3369_RS26995 WP_221107415.1 5959435..5960775(+) (pilR) [Pseudomonas mandelii strain KGI_MA19]
ATGAGCCCACGGCCAAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTACTGGAAATCACCCTGGGACGGAT
GAAACTCGATACCTACAGTGCCCGCAACCTTGGCGAAGCCCAAGCCTTGTTGATGCGCGAGACATTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCACCGGCCTTGAGTTGGTGCAGTACACCCAGCAACGTTACCCACACGTGCCGGTGGCG
ATGATCACCGCTTACGGCAGCCTCGAAACAGCAATCAACGCCCTCAAGGCAGGGGCTTTCGACTTCCTGACCAAGCCGGT
TGACCTGACGCGCCTGCGCGAACTGGTCACCAGCGCCCTGCGCTTGCCGGCACCGGGTGGCGCCAGTACCGCCATCGATC
GCCGGTTGCTGGGCGATTCACTGCCCATGCGCAACCTGCGCAAACAAATCGACAAACTCGCACGCAGTCAGGCCCCGGTG
TACATCAGCGGCGAATCCGGCAGTGGCAAGGAATTGGTCGCCCGACTGATCCACGAGCAGGGCCCGCGGGCTAATCAACC
GTTCGTCCCGGTCAACTGCGGGGCAATTCCGTCAGAGTTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGTTTCA
GCGGCGCCATCGAAGACAAACCAGGGCTGTTCCAGGCCGCCCACGGCGGCACACTGTTTCTCGACGAAGTGGCCGATCTG
CCCTTGGCGATGCAGGTCAAACTGCTCCGAGCCATTCAGGAGAAAGCCATTCGCAGTGTCGGCGGTCAGCAAGAAATGGT
GGTTGATGTCCGCATCCTTTGTGCCACCCACAAAGACCTCGATGCCGAAGTCACCGCCGAACGCTTTCGCCAGGATTTGT
ACTACCGGTTGAACGTGATCGAACTGCGCGTCCCCCCTTTGCGCGAGCGCCGCGACGACATCGAGCCGCTGGCCAGCCAT
GTTCTCAAGCGCCTGGCGGCCGGCAGCGGTCAACCCGCCGCAAAACTCCATCCACTCGCCCTGGATGCGCTGAAAAGTTA
CCGTTTTCCGGGCAACGTACGGGAGCTGGAGAACGTGCTGGAGCGGGCTTACACCCTGTGCGAGGACAAACAGATTGAAG
CCAGCGACCTGCGACTGGCCGAAGGTAACTGCACGGCAGAGAGCGGCGTGCCGGACCTGACGCAAATCGACAACCTGGAA
GATTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCACTGGAGGAAACCCGCTGGAACCGCACGGCGGCGGCTCA
GCGGTTGAATCTTTCATTCAGATCGATGCGATATCGGCTCAAGAAATTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.233

99.327

0.787
  pilR Acinetobacter baumannii strain A118

49.46

100

0.513