Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PAC13_RS30925 Genome accession   NZ_CP097557
Coordinates   6457859..6458455 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain C1.3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6452859..6463455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC13_RS30905 (PAC13_30840) aroK 6453990..6454508 (-) 519 WP_003095833.1 shikimate kinase AroK -
  PAC13_RS30910 (PAC13_30845) pilQ 6454520..6456664 (-) 2145 WP_003095835.1 type 4a pilus secretin PilQ Machinery gene
  PAC13_RS30915 (PAC13_30850) comL/pilP 6456718..6457242 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  PAC13_RS30920 (PAC13_30855) pilO 6457239..6457862 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  PAC13_RS30925 (PAC13_30860) pilN 6457859..6458455 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  PAC13_RS30930 (PAC13_30865) pilM 6458455..6459519 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  PAC13_RS30935 (PAC13_30870) - 6459704..6462175 (+) 2472 WP_023092706.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=595358 PAC13_RS30925 WP_003095839.1 6457859..6458455(-) (pilN) [Pseudomonas aeruginosa strain C1.3]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=595358 PAC13_RS30925 WP_003095839.1 6457859..6458455(-) (pilN) [Pseudomonas aeruginosa strain C1.3]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTAGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369