Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   K4H25_RS02605 Genome accession   NZ_CP081149
Coordinates   533295..533678 (+) Length   127 a.a.
NCBI ID   WP_173532918.1    Uniprot ID   -
Organism   Deefgea piscis strain D13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 528295..538678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K4H25_RS02585 (K4H25_02585) ccsB 528363..529490 (-) 1128 WP_221021879.1 c-type cytochrome biogenesis protein CcsB -
  K4H25_RS02590 (K4H25_02590) - 529501..531534 (-) 2034 WP_221021880.1 cytochrome c biogenesis protein ResB -
  K4H25_RS02595 (K4H25_02595) - 531601..532215 (-) 615 WP_221021881.1 cytochrome c -
  K4H25_RS02600 (K4H25_02600) yihA 532324..532962 (+) 639 WP_221021882.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  K4H25_RS02605 (K4H25_02605) pilG 533295..533678 (+) 384 WP_173532918.1 twitching motility response regulator PilG Regulator
  K4H25_RS02610 (K4H25_02610) - 533704..534066 (+) 363 WP_173532919.1 PleD family two-component system response regulator -
  K4H25_RS02615 (K4H25_02615) - 534090..534617 (+) 528 WP_221021883.1 chemotaxis protein CheW -
  K4H25_RS02620 (K4H25_02620) - 534656..536839 (+) 2184 WP_255587948.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 13773.91 Da        Isoelectric Point: 6.2865

>NTDB_id=595355 K4H25_RS02605 WP_173532918.1 533295..533678(+) (pilG) [Deefgea piscis strain D13]
MSSLAGIKVMVIDDSNTIRRSAEIFLGQAGCTVILAEDGFDALAKITDNNPDVIFVDVMMPRLDGYQTCALIKKNPRFKS
TPVVMLSSKDGLFDRARGRMVGSDEYLTKPFTKDSLLAAVGTYSSAT

Nucleotide


Download         Length: 384 bp        

>NTDB_id=595355 K4H25_RS02605 WP_173532918.1 533295..533678(+) (pilG) [Deefgea piscis strain D13]
ATGTCTAGTCTTGCTGGTATTAAGGTCATGGTTATCGATGACAGCAATACGATTCGACGCAGTGCTGAAATCTTTTTGGG
GCAAGCAGGTTGTACTGTTATTTTGGCTGAAGATGGCTTTGATGCCTTAGCAAAAATCACAGACAACAATCCGGATGTCA
TCTTTGTTGACGTCATGATGCCACGCTTAGATGGTTATCAAACTTGCGCCTTAATTAAAAAAAATCCGCGTTTTAAATCA
ACCCCTGTCGTGATGCTGTCGTCAAAAGATGGTTTGTTTGATCGAGCGCGCGGCCGCATGGTGGGATCTGATGAGTATTT
AACCAAGCCATTTACCAAAGACAGCCTATTGGCTGCTGTTGGCACTTACTCAAGCGCAACTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

64.516

97.638

0.63
  vicR Streptococcus mutans UA159

38.333

94.488

0.362