Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PAC13_RS14935 Genome accession   NZ_CP097557
Coordinates   3009245..3009889 (+) Length   214 a.a.
NCBI ID   WP_003090351.1    Uniprot ID   A0A0H2ZC55
Organism   Pseudomonas aeruginosa strain C1.3     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3004245..3014889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAC13_RS14920 (PAC13_14895) - 3004879..3006093 (+) 1215 WP_003130955.1 MFS transporter -
  PAC13_RS14925 (PAC13_14900) - 3006109..3007137 (-) 1029 WP_023091687.1 AraC family transcriptional regulator -
  PAC13_RS14930 (PAC13_14905) pqsH 3007755..3008903 (+) 1149 WP_023981040.1 2-heptyl-3-hydroxy-4(1H)-quinolone synthase -
  PAC13_RS14935 (PAC13_14910) letA 3009245..3009889 (+) 645 WP_003090351.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PAC13_RS14940 (PAC13_14915) uvrC 3009890..3011716 (+) 1827 WP_003090350.1 excinuclease ABC subunit UvrC -
  PAC13_RS14945 (PAC13_14920) pgsA 3011750..3012310 (+) 561 WP_003090349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PAC13_RS14955 (PAC13_14930) - 3013173..3014033 (-) 861 WP_223819151.1 fimbrial protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23608.53 Da        Isoelectric Point: 6.1073

>NTDB_id=595316 PAC13_RS14935 WP_003090351.1 3009245..3009889(+) (letA) [Pseudomonas aeruginosa strain C1.3]
MIKVLVVDDHDLVRTGITRMLADIEGLQVVGQADCGEDCLKLARELKPDVVLMDVKMPGIGGLEATRKLLRSQPDIKVVV
VTVCEEDPFPTRLMQAGAAGYMTKGAGLEEMVQAIRQVFAGQRYISPQIAQQLALKSFQPQQHDSPFDSLSEREIQIALM
IANCHKVQSISDKLCLSPKTVNTYRYRIFEKLSITSDVELALLAVRHGMVDAAS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=595316 PAC13_RS14935 WP_003090351.1 3009245..3009889(+) (letA) [Pseudomonas aeruginosa strain C1.3]
GTGATTAAGGTGCTGGTGGTCGACGACCACGATCTGGTACGCACCGGTATTACCCGCATGCTGGCCGACATCGAAGGCTT
GCAAGTGGTCGGCCAGGCCGACTGCGGTGAAGACTGTCTGAAACTGGCCCGCGAGCTGAAGCCGGATGTCGTCCTGATGG
ACGTGAAGATGCCCGGTATCGGCGGCCTGGAGGCGACCCGCAAGCTGCTGCGCAGCCAGCCCGACATCAAGGTCGTGGTA
GTCACCGTCTGCGAAGAGGATCCGTTCCCCACCCGCCTCATGCAGGCCGGCGCCGCCGGCTACATGACCAAGGGCGCGGG
GCTGGAGGAAATGGTCCAGGCGATTCGCCAGGTCTTCGCCGGCCAGCGCTATATCAGCCCGCAGATCGCCCAGCAACTGG
CGCTGAAGTCCTTCCAGCCGCAGCAGCACGATTCCCCCTTCGATTCGCTGTCCGAGCGCGAGATCCAGATCGCCCTGATG
ATCGCCAACTGCCACAAGGTGCAGAGCATCTCCGACAAGCTGTGCCTGTCGCCGAAGACCGTGAATACCTATCGCTACCG
CATCTTCGAGAAGCTCTCGATCACCAGCGACGTGGAACTGGCGCTGCTCGCCGTCCGCCACGGCATGGTCGATGCCGCCA
GCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-204)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZC55

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

54.502

98.598

0.537
  letA Legionella pneumophila strain ERS1305867

54.502

98.598

0.537