Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABEKA_RS07335 Genome accession   NZ_CP080636
Coordinates   1245510..1246145 (-) Length   211 a.a.
NCBI ID   WP_004732299.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1240510..1251145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS07305 (ABEKA_1222) - 1240758..1241390 (+) 633 WP_004732310.1 ABC transporter substrate-binding protein -
  ABEKA_RS07310 (ABEKA_1223) - 1241406..1241696 (+) 291 WP_004732307.1 STAS domain-containing protein -
  ABEKA_RS07315 (ABEKA_1224) - 1241837..1243069 (-) 1233 WP_222110704.1 transposase -
  ABEKA_RS07320 (ABEKA_1225) - 1243317..1244330 (-) 1014 WP_004732304.1 CorA family divalent cation transporter -
  ABEKA_RS07325 (ABEKA_1226) - 1244483..1245073 (+) 591 WP_222110745.1 TIGR00730 family Rossman fold protein -
  ABEKA_RS07330 (ABEKA_1227) - 1245104..1245505 (+) 402 WP_004732301.1 NUDIX domain-containing protein -
  ABEKA_RS07335 (ABEKA_1228) comF 1245510..1246145 (-) 636 WP_004732299.1 phosphoribosyltransferase family protein Machinery gene
  ABEKA_RS07340 (ABEKA_1229) recG 1246132..1248177 (-) 2046 WP_004732297.1 ATP-dependent DNA helicase RecG -
  ABEKA_RS07345 (ABEKA_1230) - 1248211..1249026 (+) 816 WP_004732295.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24300.46 Da        Isoelectric Point: 9.4810

>NTDB_id=594623 ABEKA_RS07335 WP_004732299.1 1245510..1246145(-) (comF) [Acinetobacter lwoffii strain EK30A]
MPMFKLLQHGKSWLTRLQPCQLCLTDHQSIHSVCEDCWRQLPWAHQTIQRQEMQLQIACDYAYPMDRLIQLFKYEQTLHL
QNLLAGALLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKKLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKVYAACLAGAQI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=594623 ABEKA_RS07335 WP_004732299.1 1245510..1246145(-) (comF) [Acinetobacter lwoffii strain EK30A]
ATGCCTATGTTTAAATTACTGCAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTCTGTCTGACCGATCA
TCAGTCCATTCATTCAGTCTGTGAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTACAGATTGCCTGCGACTATGCCTATCCGATGGACCGGCTGATTCAACTGTTTAAATATGAACAGACACTGCATTTG
CAAAATTTACTGGCAGGTGCGCTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCAATTGTACCGATGCCGATCTCGAATGA
GCGTCTGGCAGAGCGCGGGTATAATCAATCTCTGGTGCTGGCAAAACATGTGGCGAAAAAGCTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAGTTTATGCAGCCTGTCTGGCAGGTGCTCAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

58.937

98.104

0.578
  comF Acinetobacter baumannii D1279779

58.454

98.104

0.573