Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   ABEKA_RS06525 Genome accession   NZ_CP080636
Coordinates   1082652..1084076 (-) Length   474 a.a.
NCBI ID   WP_138743172.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain EK30A     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1077652..1089076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABEKA_RS06510 (ABEKA_1050) lptG 1078706..1079776 (+) 1071 WP_004281054.1 LPS export ABC transporter permease LptG -
  ABEKA_RS06515 (ABEKA_1051) gpmI 1079901..1081448 (+) 1548 WP_138743171.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  ABEKA_RS06520 (ABEKA_1052) - 1081479..1082651 (+) 1173 WP_005248427.1 S41 family peptidase -
  ABEKA_RS06525 (ABEKA_1053) pilR 1082652..1084076 (-) 1425 WP_138743172.1 sigma-54 dependent transcriptional regulator Regulator
  ABEKA_RS06530 (ABEKA_1054) - 1084091..1085260 (-) 1170 Protein_978 ATP-binding protein -
  ABEKA_RS06535 (ABEKA_1055) - 1085264..1085830 (-) 567 WP_109455560.1 IS630 family transposase -
  ABEKA_RS06540 (ABEKA_1056) - 1085844..1086272 (-) 429 WP_222110680.1 helix-turn-helix domain-containing protein -
  ABEKA_RS06545 (ABEKA_1057) - 1086332..1086733 (-) 402 Protein_981 histidine kinase -
  ABEKA_RS06550 (ABEKA_1059) - 1086756..1087391 (-) 636 WP_004281059.1 response regulator -
  ABEKA_RS06555 (ABEKA_1060) - 1087611..1088672 (+) 1062 WP_138743173.1 serine hydrolase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 53487.61 Da        Isoelectric Point: 6.0366

>NTDB_id=594617 ABEKA_RS06525 WP_138743172.1 1082652..1084076(-) (pilR) [Acinetobacter lwoffii strain EK30A]
MNGEQQPLVLLVDDEEDLCTLMQMSLLRMGIRTHIAHRLEDAKKCLANHQYDACLTDLNLPDGNGLELLDWIGNLYPALP
VAVLTAYGNMEIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYSHNNPNDALEHKMLIGQSMPIQQLRITLQKIA
RSQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGAAQDKQGLIQSAHGGSLFL
DEIAELPLSMQVKLLRAVQEKRIRPLGSDTEIDVDFRVISATHQDLEALVQQGKFRQDLYFRIHVMDLTLPPLRERGQDI
LLLAEHFIQKICQEWGIPNKKLTERSKEFLLGQYYSGNVRELRNIMERAITLSDEERIDLQHLQSAPLRQALNSPQEMNT
LTSEIIATETLIAPKKLAEEGLELYLEKVEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEEDE

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=594617 ABEKA_RS06525 WP_138743172.1 1082652..1084076(-) (pilR) [Acinetobacter lwoffii strain EK30A]
ATGAATGGGGAACAACAACCACTGGTGCTCTTGGTGGATGATGAGGAAGATTTATGTACCCTCATGCAAATGTCATTGCT
GCGCATGGGAATTCGCACGCACATTGCCCATCGTTTGGAAGACGCTAAAAAATGCCTTGCCAATCATCAATATGATGCCT
GTCTGACCGACCTAAACCTTCCCGATGGCAATGGTTTGGAGTTACTGGATTGGATTGGCAATCTTTACCCGGCACTTCCA
GTCGCGGTTCTGACCGCCTATGGCAACATGGAAATCGCCATTGCTGCGCTCAAAGCCGGGGCCTTTGATTTTGTCAGTAA
ACCGATTAATCAGAAACATCTGGAACAGCTCTTACAAAAAGCCCTGAATAAACCGGTGGATTATTCGCATAATAATCCGA
ATGATGCGCTCGAACATAAAATGCTGATTGGACAATCCATGCCAATTCAGCAATTACGCATTACCTTACAAAAAATTGCC
CGCTCACAAGCCCCGGTTTTTATCACTGGTGAATCAGGCACAGGTAAGGAAGTCGTGGCCAATCTGGTCCATCGCCTGAG
TAACCGCAATGAAGGTCCTTTTATTGCGATTAACTGTGGTGCCATTCCGACTGAGTTGATGGAAAGCGAACTGTTTGGGC
ATAAGAAAGGCAGCTTTACCGGCGCTGCTCAGGACAAACAGGGTCTGATTCAATCTGCCCATGGTGGCAGTCTGTTTCTG
GATGAAATTGCAGAATTACCGCTTTCTATGCAGGTCAAATTGTTACGTGCCGTACAGGAAAAACGTATTCGTCCACTCGG
TTCGGATACCGAAATTGATGTGGATTTCCGTGTGATCAGTGCCACGCATCAGGATCTGGAAGCCTTGGTGCAACAAGGCA
AATTCCGTCAGGATTTATATTTCCGTATTCATGTAATGGATCTGACTTTACCGCCATTACGTGAACGAGGCCAGGATATT
CTGTTATTGGCTGAACACTTTATTCAGAAGATTTGCCAGGAATGGGGCATTCCCAATAAAAAACTGACCGAACGCAGCAA
AGAGTTCTTATTGGGACAATATTACTCAGGTAATGTGCGTGAATTACGTAATATTATGGAACGCGCGATTACTTTAAGTG
ATGAAGAGCGGATTGATCTTCAGCATTTGCAGAGCGCACCGCTACGTCAGGCGCTAAACAGCCCTCAGGAGATGAATACG
CTCACGAGCGAGATCATTGCCACCGAAACCCTGATTGCACCTAAAAAGTTGGCTGAAGAGGGTCTAGAGCTGTATTTGGA
AAAGGTCGAAAAAGAAATTTTACTGAATGCGCTGAATCTGACCCATTGGAATCGGACACTGGCCGCAAAAAAACTCGGCA
TGTCGTTCCGTTCCCTGCGCTATCGCTTGAAAAAGTTCGGCCTGGATACCGAAGAAGACGAATAA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(142-308)

Response regulator receiver domain (Response_reg)

(9-118)

Bacterial regulatory protein, Fis family (HTH_8)

(426-466)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

73.629

100

0.736
  pilR Pseudomonas aeruginosa PAK

49.024

97.257

0.477