Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   K3G18_RS16270 Genome accession   NZ_CP080629
Coordinates   3132245..3132889 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain YPS-32     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3127245..3137889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS16235 (K3G18_16235) mrpB 3128437..3128868 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  K3G18_RS16240 (K3G18_16240) mrpC 3128868..3129209 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  K3G18_RS16245 (K3G18_16245) mrpD 3129202..3130683 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  K3G18_RS16250 (K3G18_16250) mrpE 3130689..3131165 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  K3G18_RS16255 (K3G18_16255) mrpF 3131165..3131449 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  K3G18_RS16260 (K3G18_16260) mnhG 3131433..3131807 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  K3G18_RS16265 (K3G18_16265) yuxO 3131846..3132226 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  K3G18_RS16270 (K3G18_16270) comA 3132245..3132889 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  K3G18_RS16275 (K3G18_16275) comP 3132970..3135282 (-) 2313 WP_032722435.1 histidine kinase Regulator
  K3G18_RS16280 (K3G18_16280) comX 3135298..3135519 (-) 222 WP_014480704.1 competence pheromone ComX -
  K3G18_RS16285 (K3G18_16285) - 3135521..3136384 (-) 864 WP_032722437.1 polyprenyl synthetase family protein -
  K3G18_RS16290 (K3G18_16290) degQ 3136569..3136709 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  K3G18_RS16295 (K3G18_16295) - 3136931..3137056 (+) 126 WP_003228793.1 hypothetical protein -
  K3G18_RS16300 (K3G18_16300) - 3137170..3137538 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=594537 K3G18_RS16270 WP_003220716.1 3132245..3132889(-) (comA) [Bacillus subtilis strain YPS-32]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=594537 K3G18_RS16270 WP_003220716.1 3132245..3132889(-) (comA) [Bacillus subtilis strain YPS-32]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1