Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   K3G18_RS12160 Genome accession   NZ_CP080629
Coordinates   2387567..2388637 (-) Length   356 a.a.
NCBI ID   WP_004399124.1    Uniprot ID   A0A809FNW6
Organism   Bacillus subtilis strain YPS-32     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2382567..2393637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS12115 (K3G18_12115) tapA 2383045..2383806 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  K3G18_RS12120 (K3G18_12120) yqzG 2384078..2384404 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  K3G18_RS12125 (K3G18_12125) spoIITA 2384446..2384625 (-) 180 WP_029726723.1 YqzE family protein -
  K3G18_RS12130 (K3G18_12130) comGG 2384697..2385071 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  K3G18_RS12135 (K3G18_12135) comGF 2385072..2385455 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  K3G18_RS12140 (K3G18_12140) comGE 2385481..2385828 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  K3G18_RS12145 (K3G18_12145) comGD 2385812..2386243 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  K3G18_RS12150 (K3G18_12150) comGC 2386233..2386529 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene
  K3G18_RS12155 (K3G18_12155) comGB 2386543..2387580 (-) 1038 WP_029317912.1 comG operon protein ComGB Machinery gene
  K3G18_RS12160 (K3G18_12160) comGA 2387567..2388637 (-) 1071 WP_004399124.1 competence protein ComGA Machinery gene
  K3G18_RS12165 (K3G18_12165) - 2388850..2389047 (-) 198 WP_014480259.1 CBS domain-containing protein -
  K3G18_RS12170 (K3G18_12170) corA 2389049..2390002 (-) 954 WP_004399136.1 magnesium transporter CorA -
  K3G18_RS12175 (K3G18_12175) yqhB 2390145..2391473 (+) 1329 WP_003230150.1 hemolysin family protein -
  K3G18_RS12180 (K3G18_12180) rsbRD 2391526..2392362 (-) 837 WP_003230149.1 RsbT co-antagonist protein RsbRD -
  K3G18_RS12190 (K3G18_12190) mgsR 2392586..2392966 (-) 381 WP_003230147.1 transcriptional regulator MgsR -
  K3G18_RS12195 (K3G18_12195) yqgY 2393198..2393443 (+) 246 WP_003226300.1 DUF2626 domain-containing protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40458.64 Da        Isoelectric Point: 9.0175

>NTDB_id=594523 K3G18_RS12160 WP_004399124.1 2387567..2388637(-) (comGA) [Bacillus subtilis strain YPS-32]
MDSIEKVSKNLIEEAYLTKASDIHIVPRERDAIIHFRVDHALLKKRDMKKEECVRLISHFKFLSAMDIGERRKPQNGSLT
LKLKEGNVHLRMSTLPTINEESLVIRVMPQYNIPSIDKLSLFPKTGATLLSFLKHSHGMLIFTGPTGSGKTTTLYSLVQY
AKKHFNRNIVTLEDPVETRDEDVLQVQVNEKAGVTYSAGLKAILRHDPDMIILGEIRDAETAEIAVRAAMTGHLVLTSLH
TRDAKGAIYRLLEFGINMNEIEQTVIAIAAQRLVDLACPFCENGCSSVYCRQSRNTRRASVYELLYGKNLQQCIQEAKGN
HANYQYQTLRQIIRKGIALGYLTTNNYDRWVYHEKD

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=594523 K3G18_RS12160 WP_004399124.1 2387567..2388637(-) (comGA) [Bacillus subtilis strain YPS-32]
TTGGATTCAATAGAAAAGGTAAGCAAAAACTTGATTGAAGAGGCATATCTAACAAAGGCTTCTGATATTCACATTGTGCC
GAGGGAGCGGGACGCTATCATTCATTTTCGGGTCGATCATGCCTTGCTGAAAAAAAGGGACATGAAAAAAGAAGAGTGCG
TAAGGCTGATTTCACATTTTAAATTTCTTTCAGCAATGGATATAGGTGAAAGGCGAAAGCCGCAAAACGGTTCGCTTACG
TTAAAGCTGAAAGAGGGAAATGTTCATTTAAGAATGTCAACGCTGCCCACAATTAATGAAGAAAGCCTCGTGATCAGAGT
GATGCCCCAATACAATATCCCTTCGATTGATAAATTGTCGCTATTTCCGAAGACAGGAGCCACATTACTCTCGTTTTTAA
AACATTCCCATGGCATGCTCATTTTTACCGGGCCAACTGGTTCAGGGAAGACTACCACACTATACTCTCTCGTTCAATAT
GCAAAAAAACACTTTAATCGAAATATTGTCACATTAGAGGACCCTGTTGAAACAAGGGACGAAGATGTTCTTCAGGTTCA
GGTGAATGAAAAAGCCGGTGTAACTTATTCCGCAGGTCTGAAAGCAATTTTGCGCCATGACCCCGATATGATTATTTTAG
GTGAGATCAGAGACGCGGAAACAGCTGAAATTGCGGTGCGGGCAGCGATGACGGGACATCTGGTACTAACGAGCCTTCAT
ACGAGAGACGCAAAGGGCGCAATTTACAGACTGCTTGAATTCGGTATCAATATGAATGAAATTGAACAGACTGTCATTGC
AATAGCGGCTCAGCGCTTGGTTGATTTGGCTTGCCCGTTTTGTGAAAACGGATGTTCATCAGTGTATTGTCGCCAGTCAC
GAAATACCAGGAGAGCTAGCGTTTATGAGCTTCTTTACGGGAAAAATCTTCAGCAATGTATCCAGGAGGCAAAAGGAAAT
CATGCAAATTACCAATATCAAACGCTTCGTCAAATTATCAGGAAAGGAATTGCGCTCGGCTATTTAACAACAAACAACTA
TGACCGGTGGGTTTATCATGAAAAAGATTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FNW6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

100

100

1