Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   K3G18_RS12100 Genome accession   NZ_CP080629
Coordinates   2381212..2381547 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain YPS-32     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2376212..2386547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3G18_RS12080 (K3G18_12080) gcvT 2376804..2377892 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  K3G18_RS12085 (K3G18_12085) hepAA 2378334..2380007 (+) 1674 WP_029726726.1 DEAD/DEAH box helicase -
  K3G18_RS12090 (K3G18_12090) yqhG 2380028..2380822 (+) 795 WP_015714249.1 YqhG family protein -
  K3G18_RS12095 (K3G18_12095) sinI 2381005..2381178 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  K3G18_RS12100 (K3G18_12100) sinR 2381212..2381547 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  K3G18_RS12105 (K3G18_12105) tasA 2381640..2382425 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  K3G18_RS12110 (K3G18_12110) sipW 2382489..2383061 (-) 573 WP_072692741.1 signal peptidase I SipW -
  K3G18_RS12115 (K3G18_12115) tapA 2383045..2383806 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  K3G18_RS12120 (K3G18_12120) yqzG 2384078..2384404 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  K3G18_RS12125 (K3G18_12125) spoIITA 2384446..2384625 (-) 180 WP_029726723.1 YqzE family protein -
  K3G18_RS12130 (K3G18_12130) comGG 2384697..2385071 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  K3G18_RS12135 (K3G18_12135) comGF 2385072..2385455 (-) 384 WP_032722118.1 ComG operon protein ComGF Machinery gene
  K3G18_RS12140 (K3G18_12140) comGE 2385481..2385828 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene
  K3G18_RS12145 (K3G18_12145) comGD 2385812..2386243 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  K3G18_RS12150 (K3G18_12150) comGC 2386233..2386529 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=594516 K3G18_RS12100 WP_003226345.1 2381212..2381547(+) (sinR) [Bacillus subtilis strain YPS-32]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=594516 K3G18_RS12100 WP_003226345.1 2381212..2381547(+) (sinR) [Bacillus subtilis strain YPS-32]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1