Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M7749_RS10400 Genome accession   NZ_CP097360
Coordinates   2181331..2181987 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain AGR4587     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2176331..2186987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M7749_RS10370 (M7749_10370) dcyD 2177210..2178196 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  M7749_RS10375 (M7749_10375) tcyL 2178211..2178879 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  M7749_RS10380 (M7749_10380) tcyN 2178876..2179628 (+) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  M7749_RS10385 (M7749_10385) sdiA 2179858..2180580 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  M7749_RS10390 (M7749_10390) yecF 2180648..2180872 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  M7749_RS10395 (M7749_10395) yecU 2180859..2181035 (-) 177 WP_001307856.1 protein YecU -
  M7749_RS10400 (M7749_10400) letA 2181331..2181987 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  M7749_RS10405 (M7749_10405) uvrC 2181984..2183816 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  M7749_RS10410 (M7749_10410) pgsA 2183873..2184421 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M7749_RS10430 (M7749_10430) yecA 2185070..2185735 (+) 666 WP_000847877.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=594462 M7749_RS10400 WP_000611328.1 2181331..2181987(+) (letA) [Escherichia coli strain AGR4587]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=594462 M7749_RS10400 WP_000611328.1 2181331..2181987(+) (letA) [Escherichia coli strain AGR4587]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482