Detailed information NTG0594410

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: A9R16_RS11230
• Genome accession: NZ_CP080624
• Coordinates: 2382964..2384328 (+)
• Length: 454 a.a.
• NCBI ID: WP_065970834.1
• Uniprot ID: -
• Organism: Acidiferrobacter thiooxydans strain ZJ
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2377964..2389328

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A9R16_RS11195 (A9R16_011330)	cgtA	2377989..2379050 (-)	1062	WP_065971597.1	Obg family GTPase CgtA	-
A9R16_RS11200 (A9R16_011335)	rpmA	2379093..2379353 (-)	261	WP_065971598.1	50S ribosomal protein L27	-
A9R16_RS11205 (A9R16_011340)	rplU	2379363..2379695 (-)	333	WP_065971599.1	50S ribosomal protein L21	-
A9R16_RS11210 (A9R16_011345)	ispB	2379899..2380897 (+)	999	WP_065971600.1	octaprenyl diphosphate synthase	-
A9R16_RS11220 (A9R16_011355)	-	2381023..2381274 (+)	252	WP_065971601.1	PP0621 family protein	-
A9R16_RS11225 (A9R16_011360)	-	2381315..2382967 (+)	1653	WP_114283106.1	sensor histidine kinase	-
A9R16_RS11230 (A9R16_011365)	pilR	2382964..2384328 (+)	1365	WP_065970834.1	sigma-54-dependent transcriptional regulator	Regulator
A9R16_RS11235 (A9R16_011370)	-	2384582..2387899 (-)	3318	WP_141689301.1	hypothetical protein	-
A9R16_RS11240 (A9R16_011375)	-	2387971..2388558 (-)	588	WP_141689302.1	hypothetical protein	-

Sequence

Protein

• Length: 454 a.a.
• Molecular weight: 49083.40 Da
• Isoelectric Point: 6.2969

>NTDB_id=594410 A9R16_RS11230 WP_065970834.1 2382964..2384328(+) (pilR) [Acidiferrobacter thiooxydans strain ZJ]
MTIPQVLIIDDEADIRALLELTLGRMNIETRSAGDVASAFALLEEYRFDLCLTDMRLPDGDGLAIVRHIEEHHRGLPVAV
ITAHGSMETAIAALKGGAFDFVCKPLNINELRALVRSALNLSKQAPSDGASAAAKLLGDSQAIREVRALIERLARGQAPV
YISGESGTGKELAARLIHDLGPRAGRPFVAVNCGAIPEQLMESEFFGHKKGSFTGAFNDKDGLFKTASGGTLFLDEVGDL
PVPMQVKLLRAIQEKAVRPVGSQQEVAVDVRILSATHKNLHDLVRTGAFRQDLYYRLNVIELVIPPLRERAGDIPALAAH
LAAKLSMGRPLPLTPAALAALKRYAFPGNVRELENIMERALTLCESGEIDVADLRLPGHDAPGLSGKVAAPEASPFNASD
YTGEQSLEEHLVQVERAAIEKALRDTNQNKTAAARELGITFRALRYKLEKLGIE

Nucleotide

• Length: 1365 bp

>NTDB_id=594410 A9R16_RS11230 WP_065970834.1 2382964..2384328(+) (pilR) [Acidiferrobacter thiooxydans strain ZJ]
ATGACGATCCCCCAAGTCCTTATCATCGATGACGAAGCCGATATCCGCGCGCTGCTCGAGCTCACGCTCGGCCGCATGAA
TATCGAGACCCGCTCGGCCGGCGACGTGGCCTCGGCCTTCGCACTGCTCGAGGAGTACCGGTTCGACCTGTGCCTCACGG
ATATGCGCCTGCCGGACGGTGACGGCCTGGCCATCGTGCGCCATATCGAGGAGCATCATCGCGGGCTTCCGGTGGCGGTC
ATCACCGCCCACGGGAGCATGGAGACGGCCATCGCGGCGTTGAAGGGCGGGGCCTTCGACTTCGTATGTAAACCCCTCAA
TATCAATGAGTTACGGGCACTCGTACGCAGTGCCCTGAACCTCTCGAAACAGGCGCCGAGCGACGGCGCGAGCGCCGCCG
CCAAACTTCTCGGTGATTCCCAGGCCATCCGCGAGGTCCGCGCCCTCATCGAGCGCCTGGCGCGCGGACAGGCGCCCGTA
TACATCTCCGGGGAATCGGGCACCGGCAAGGAACTCGCCGCGCGCCTCATCCATGACCTCGGACCCCGTGCCGGCCGCCC
GTTCGTGGCCGTCAACTGCGGGGCGATACCCGAGCAGCTGATGGAAAGCGAGTTCTTCGGTCACAAGAAGGGCAGCTTCA
CCGGCGCCTTCAACGACAAGGACGGGCTTTTCAAGACCGCGAGCGGGGGCACTTTGTTCCTGGACGAGGTCGGCGACCTG
CCGGTCCCCATGCAGGTGAAGCTTCTGCGCGCCATCCAGGAGAAGGCGGTGCGTCCGGTCGGCAGCCAGCAGGAAGTGGC
GGTGGACGTGCGCATCCTGTCGGCCACACACAAAAACCTCCACGACCTCGTACGCACCGGCGCGTTCCGCCAGGACCTCT
ACTATCGCCTGAACGTCATTGAGCTCGTGATCCCGCCGCTGCGCGAACGCGCCGGCGACATCCCGGCGCTCGCGGCGCAT
CTCGCCGCCAAACTGAGTATGGGTCGCCCCTTGCCGCTCACCCCCGCCGCCCTGGCGGCGCTCAAGAGATACGCATTCCC
CGGCAACGTCCGCGAACTCGAGAACATCATGGAGCGGGCGCTGACCTTGTGCGAGAGCGGCGAGATCGATGTGGCGGACC
TGCGTCTACCCGGACACGATGCCCCGGGGCTATCCGGCAAAGTCGCCGCGCCGGAGGCCTCGCCCTTCAATGCCAGCGAT
TACACGGGCGAACAATCACTCGAGGAACACCTGGTCCAGGTCGAACGCGCGGCGATCGAAAAGGCCCTGCGCGACACCAA
TCAGAATAAGACCGCTGCCGCCCGCGAGCTCGGCATCACCTTCCGCGCCCTGCGCTACAAGCTCGAAAAGCTCGGCATCG
AATAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Bacterial regulatory protein, Fis family (HTH_8) (413-451)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	60.304	100	0.612
pilR	Acinetobacter baumannii strain A118	48.712	100	0.5