Detailed information NTG0594408

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: M5598_RS14380
• Genome accession: NZ_CP097355
• Coordinates: 3041835..3042842 (+)
• Length: 335 a.a.
• NCBI ID: WP_005481416.1
• Uniprot ID: -
• Organism: Vibrio parahaemolyticus strain 16-VB00198
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 3036835..3047842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5598_RS14360 (M5598_14345)	rplC	3037369..3037998 (-)	630	WP_005456132.1	50S ribosomal protein L3	-
M5598_RS14365 (M5598_14350)	rpsJ	3038013..3038324 (-)	312	WP_004410492.1	30S ribosomal protein S10	-
M5598_RS14370 (M5598_14355)	rpmE	3038782..3039003 (-)	222	WP_005457203.1	50S ribosomal protein L31	-
M5598_RS14375 (M5598_14360)	priA	3039298..3041502 (+)	2205	WP_025622698.1	primosomal protein N'	Machinery gene
M5598_RS14380 (M5598_14365)	cytR	3041835..3042842 (+)	1008	WP_005481416.1	DNA-binding transcriptional regulator CytR	Regulator
M5598_RS14385 (M5598_14370)	ftsN	3043019..3043564 (+)	546	WP_005489623.1	cell division protein FtsN	-
M5598_RS14390 (M5598_14375)	hslV	3043728..3044279 (+)	552	WP_005489705.1	ATP-dependent protease subunit HslV	-
M5598_RS14395 (M5598_14380)	hslU	3044303..3045634 (+)	1332	WP_005489452.1	HslU--HslV peptidase ATPase subunit	-
M5598_RS14400 (M5598_14385)	-	3045819..3046736 (+)	918	WP_005457195.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
M5598_RS14405 (M5598_14390)	rraA	3046813..3047325 (+)	513	WP_005457192.1	ribonuclease E activity regulator RraA	-
M5598_RS14410 (M5598_14395)	zapB	3047430..3047672 (-)	243	WP_005481417.1	cell division protein ZapB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 36835.35 Da
• Isoelectric Point: 6.4938

>NTDB_id=594408 M5598_RS14380 WP_005481416.1 3041835..3042842(+) (cytR) [Vibrio parahaemolyticus strain 16-VB00198]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVTIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPDTAVLCQFRQQGYQQALRRAGISKDPQYSVITEFSFDGGAKAVRKLLELPEPPTA
IFCHCDTMAIGAIQEAKRLGLRVPQDLSVVGFDDINFAQYCDPPLTTISQPRYEIGRQAMLMMLELLKGHDVHSGSRLLE
TKLVVRGSAAPPQRA

Nucleotide

• Length: 1008 bp

>NTDB_id=594408 M5598_RS14380 WP_005481416.1 3041835..3042842(+) (cytR) [Vibrio parahaemolyticus strain 16-VB00198]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCGGGAGTGTCGACAGCTACGGTATCTCGAGCATTAATGAATCCAGAAAA
AGTCTCTTCTTCAACAAGAAAAAGAGTCGAAGATGCCGTCCTTGAAGCGGGCTATTCTCCAAATTCATTAGCGCGTAATC
TACGTAGAAACGAATCAAAAACGATTGTTACCATCGTTCCTGACATCTGTGATCCTTATTTTTCTGAAATCATTCGTGGT
ATCGAAGACGCCGCTATGGAACATGGCTACCTCGTACTGCTCGGTGACAGCGGCCAGCAGAAAAAGCGTGAAAGCTCGTT
TGTGAATCTAGTGTTCACCAAACAAGCCGATGGCATGTTACTGCTTGGCACCGACCTGCCATTTGATGTCAGCAAGCCAG
AACAGAAAAACCTGCCACCCATGGTCATGGCTTGTGAGTTTGCGCCAGAGCTAGAATTACCAACCGTGCACATTGACAAC
CTAACGTCTGCTTTTGAAGCGGTCAATTACCTAACTCAGCTTGGCCATAAACGCATAGCACAAATTTCAGGGCCAGACAC
AGCGGTGTTGTGTCAGTTCCGCCAGCAAGGTTATCAACAAGCCTTGCGTCGCGCGGGGATCAGTAAAGACCCACAATACA
GCGTTATCACTGAGTTTTCTTTTGACGGCGGCGCGAAAGCTGTACGTAAGTTGCTAGAACTTCCAGAGCCACCAACTGCG
ATTTTCTGCCATTGCGACACCATGGCAATCGGCGCAATCCAAGAAGCGAAACGACTCGGTCTGCGCGTTCCGCAAGATCT
GTCAGTGGTTGGTTTCGATGATATCAACTTTGCTCAATACTGCGATCCACCGTTAACGACCATTTCTCAACCTCGTTATG
AAATTGGCCGCCAAGCGATGCTTATGATGCTTGAACTACTTAAAGGCCATGACGTTCATTCAGGTTCACGCTTACTAGAA
ACTAAGCTTGTTGTCCGTGGTAGCGCAGCGCCACCGCAACGCGCCTAA

Domains

Predicted by InterProScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio parahaemolyticus RIMD 2210633	100	100	1
cytR	Vibrio cholerae C6706	90.719	99.701	0.904