Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A9R16_RS08965 Genome accession   NZ_CP080624
Coordinates   1869269..1870615 (-) Length   448 a.a.
NCBI ID   WP_065970472.1    Uniprot ID   A0A1C2G1B1
Organism   Acidiferrobacter thiooxydans strain ZJ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864269..1875615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9R16_RS08950 (A9R16_009060) pstC 1865324..1866292 (+) 969 WP_065970478.1 phosphate ABC transporter permease subunit PstC -
  A9R16_RS08955 (A9R16_009065) pstA 1866276..1867151 (+) 876 WP_065970476.1 phosphate ABC transporter permease PstA -
  A9R16_RS08960 (A9R16_009070) - 1867589..1869217 (-) 1629 WP_141689281.1 bifunctional diguanylate cyclase/phosphodiesterase -
  A9R16_RS08965 (A9R16_009075) radA 1869269..1870615 (-) 1347 WP_065970472.1 DNA repair protein RadA Machinery gene
  A9R16_RS08970 (A9R16_009080) iscB 1870612..1872027 (-) 1416 WP_228579621.1 RNA-guided endonuclease IscB -
  A9R16_RS08975 (A9R16_009085) alr 1872393..1873475 (-) 1083 WP_065971760.1 alanine racemase -
  A9R16_RS08980 (A9R16_009090) dnaB 1873472..1874866 (-) 1395 WP_211306876.1 replicative DNA helicase -
  A9R16_RS08985 (A9R16_009095) rplI 1874900..1875349 (-) 450 WP_065971759.1 50S ribosomal protein L9 -
  A9R16_RS08990 (A9R16_009100) rpsR 1875361..1875588 (-) 228 WP_065971758.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 47512.73 Da        Isoelectric Point: 9.1915

>NTDB_id=594407 A9R16_RS08965 WP_065970472.1 1869269..1870615(-) (radA) [Acidiferrobacter thiooxydans strain ZJ]
MKARSYYQCRECGARSVQWAGRCDACAAWNTMVAMGGAAPADVSAGSKRAMSLSEVRCEGVTRWSSGLQELDRVLGGGVV
PGSVVLLGGDPGIGKSTILIQTLAAMSANLSALYVTGEESTAQVALRGRRLGLLAPGMKLLAETNVEAIIAQARLEAPRV
LVIDSIQTVYLPHLAQAPGSVAQVREAAATLVRYAKESDTALFLVGHVTKEGQLAGPRVLEHMVDAVLYFEGDSGSRYRL
IRAIKNRFGAVNEIGVFVMTEGGLREVTNPSALFLRQDAHNAPGSVTLVTQEGTRPLLVEVQALIDESPGGNPRRVALGL
DGQRLGMLLALLHRHGGHATGRHDVFVNVAGGVRVTETASDLAVLLACASSLTDRPVPRDLVVFGEVGLAGEMRPVPRGQ
ERLREAAKLGFKRAIVPAANVAKRTTHGDIAVFGARQLREALAQFLKE

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=594407 A9R16_RS08965 WP_065970472.1 1869269..1870615(-) (radA) [Acidiferrobacter thiooxydans strain ZJ]
ATGAAGGCGCGCAGCTACTACCAGTGCCGTGAGTGCGGGGCGCGCTCGGTCCAGTGGGCCGGACGATGCGATGCCTGCGC
CGCTTGGAACACGATGGTGGCGATGGGTGGCGCCGCCCCGGCCGACGTCTCTGCGGGCAGCAAGCGCGCGATGTCGCTGT
CGGAGGTGCGTTGCGAGGGCGTGACGCGCTGGTCGTCCGGCCTGCAAGAGCTCGACCGCGTGCTGGGCGGAGGCGTGGTG
CCGGGCTCGGTGGTACTGCTGGGTGGCGACCCCGGTATCGGCAAATCGACGATCCTCATCCAGACCCTGGCGGCCATGAG
CGCGAATCTAAGCGCCCTGTATGTCACCGGCGAGGAATCGACCGCACAGGTGGCCCTGCGCGGCCGCCGGCTTGGACTGC
TGGCGCCGGGCATGAAGTTGCTGGCCGAGACCAATGTCGAGGCGATCATTGCCCAGGCACGCCTGGAGGCCCCACGGGTC
CTGGTGATCGACTCGATCCAGACCGTCTATCTGCCTCACCTCGCGCAGGCCCCAGGCAGCGTCGCGCAAGTACGCGAGGC
GGCCGCCACGCTGGTACGCTACGCCAAGGAATCCGACACGGCGCTCTTCCTGGTCGGACATGTGACCAAGGAAGGCCAGC
TGGCCGGACCCCGGGTGCTCGAGCACATGGTCGACGCAGTCTTGTACTTCGAGGGCGACAGCGGGAGCCGCTATCGCCTG
ATCCGCGCCATCAAAAATCGTTTCGGGGCGGTCAACGAAATCGGCGTGTTCGTGATGACCGAAGGTGGCCTGCGCGAGGT
GACCAACCCCTCGGCGCTGTTCCTCCGTCAGGACGCCCATAATGCCCCTGGGAGCGTCACCTTGGTGACGCAGGAGGGCA
CCCGGCCGCTGCTCGTGGAGGTCCAGGCGTTGATCGACGAGAGCCCGGGAGGTAACCCGCGACGGGTCGCCCTGGGGCTT
GATGGCCAGCGCCTGGGCATGTTGCTGGCCTTGCTACATCGCCACGGCGGGCATGCCACCGGGCGTCACGATGTATTCGT
GAATGTCGCCGGCGGCGTCCGCGTCACCGAAACCGCCTCCGATCTCGCCGTCCTGCTGGCCTGCGCCTCGAGCCTCACGG
ATCGTCCGGTACCCCGTGATCTCGTGGTCTTTGGAGAGGTGGGGCTGGCCGGCGAGATGCGCCCGGTACCCCGTGGCCAG
GAACGACTTCGGGAGGCGGCCAAGCTTGGCTTCAAGCGCGCCATCGTCCCGGCTGCGAATGTGGCCAAACGCACGACACA
CGGGGACATCGCGGTATTCGGGGCCAGACAGCTTCGCGAAGCACTGGCACAGTTTTTGAAAGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-33)

Subunit ChlI of Mg-chelatase (ChlI)

(337-420)

AAA domain (AAA_25)

(71-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C2G1B1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

47.894

100

0.482
  radA Streptococcus pneumoniae Rx1

45.111

100

0.453
  radA Streptococcus pneumoniae D39

45.111

100

0.453
  radA Streptococcus pneumoniae R6

45.111

100

0.453
  radA Streptococcus pneumoniae TIGR4

45.111

100

0.453
  radA Streptococcus mitis SK321

45.111

100

0.453
  radA Streptococcus mitis NCTC 12261

44.889

100

0.451