Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M5598_RS10105 Genome accession   NZ_CP097355
Coordinates   2093203..2093847 (-) Length   214 a.a.
NCBI ID   WP_005386783.1    Uniprot ID   Q87NC3
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2088203..2098847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS10095 (M5598_10085) pgsA 2090765..2091322 (-) 558 WP_005494716.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M5598_RS10100 (M5598_10090) uvrC 2091369..2093201 (-) 1833 WP_079854879.1 excinuclease ABC subunit UvrC -
  M5598_RS10105 (M5598_10095) letA 2093203..2093847 (-) 645 WP_005386783.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  M5598_RS10110 (M5598_10100) - 2094347..2096710 (+) 2364 WP_020840973.1 DNA polymerase II -
  M5598_RS10115 (M5598_10105) - 2096707..2097474 (-) 768 WP_017448417.1 nucleotidyltransferase domain-containing protein -
  M5598_RS10120 (M5598_10110) yeiP 2097661..2098227 (+) 567 WP_005465079.1 elongation factor P-like protein YeiP -
  M5598_RS10125 (M5598_10115) - 2098230..2098550 (+) 321 WP_005465080.1 HI1450 family dsDNA-mimic protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23765.32 Da        Isoelectric Point: 5.6509

>NTDB_id=594384 M5598_RS10105 WP_005386783.1 2093203..2093847(-) (letA) [Vibrio parahaemolyticus strain 16-VB00198]
MINVFLVDDHELVRTGIRRIIEDVRGMNVAGEADSGEDAVKWCRSNHADVVLMDMNMPGIGGLEATKKILRVNPDVKIIV
LTVHTENPFPTKVMQAGASGYLTKGAGPDEMVNAIRVVNSGQRYISPEIAQQMALSQFSPASENPFKDLSERELQIMLMI
TKGQKVTDISEQLNLSPKTVNSYRYRLFSKLDINGDVELTHLAIRHGMLDTETL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=594384 M5598_RS10105 WP_005386783.1 2093203..2093847(-) (letA) [Vibrio parahaemolyticus strain 16-VB00198]
TTGATTAATGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAACGTAGCAGGAGAAGCTGACAGCGGTGAAGATGCAGTGAAATGGTGTCGCAGTAATCATGCTGACGTCGTTTTAATGG
ACATGAACATGCCTGGGATTGGCGGCTTGGAAGCCACCAAGAAAATTCTTCGCGTGAATCCAGATGTGAAAATCATCGTA
CTAACCGTTCATACGGAAAATCCGTTTCCAACCAAAGTGATGCAGGCTGGTGCTTCTGGTTATTTAACCAAAGGTGCAGG
GCCGGATGAAATGGTAAATGCAATTCGTGTGGTCAATAGTGGGCAGCGTTACATCTCTCCAGAGATAGCGCAGCAAATGG
CATTGAGCCAGTTTTCACCAGCCTCTGAAAACCCATTTAAAGATTTGTCCGAACGTGAACTGCAAATCATGCTTATGATC
ACGAAAGGTCAGAAAGTAACGGATATTTCTGAGCAACTTAACTTAAGTCCAAAGACAGTCAACAGCTACCGATATCGACT
GTTTAGCAAGCTGGACATTAATGGTGACGTTGAGTTAACACACTTAGCGATTCGCCACGGAATGCTGGACACCGAGACCC
TTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(149-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87NC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.952

98.131

0.5
  letA Legionella pneumophila strain ERS1305867

50.952

98.131

0.5