Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   M4D82_RS15710 Genome accession   NZ_CP097322
Coordinates   3433434..3434033 (-) Length   199 a.a.
NCBI ID   WP_249766648.1    Uniprot ID   -
Organism   Streptomyces sp. RerS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3428434..3439033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D82_RS15690 (M4D82_15690) - 3429325..3429879 (-) 555 WP_249771844.1 SigE family RNA polymerase sigma factor -
  M4D82_RS15695 (M4D82_15695) - 3430283..3431359 (-) 1077 WP_249766645.1 aspartate-semialdehyde dehydrogenase -
  M4D82_RS15700 (M4D82_15700) - 3431356..3432630 (-) 1275 WP_249766646.1 aspartate kinase -
  M4D82_RS15705 (M4D82_15705) - 3432794..3433441 (-) 648 WP_249766647.1 DUF5063 domain-containing protein -
  M4D82_RS15710 (M4D82_15710) recR 3433434..3434033 (-) 600 WP_249766648.1 recombination mediator RecR Machinery gene
  M4D82_RS15715 (M4D82_15715) - 3434085..3434429 (-) 345 WP_249766649.1 YbaB/EbfC family nucleoid-associated protein -
  M4D82_RS15720 (M4D82_15720) - 3434697..3435428 (+) 732 WP_249766650.1 SLATT domain-containing protein -
  M4D82_RS15725 (M4D82_15725) - 3435477..3436127 (-) 651 WP_249766651.1 hypothetical protein -
  M4D82_RS15730 (M4D82_15730) - 3436263..3436928 (-) 666 WP_249766652.1 GntR family transcriptional regulator -
  M4D82_RS15735 (M4D82_15735) - 3437037..3438389 (-) 1353 WP_249766653.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21772.10 Da        Isoelectric Point: 5.0034

>NTDB_id=594293 M4D82_RS15710 WP_249766648.1 3433434..3434033(-) (recR) [Streptomyces sp. RerS4]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKEKVRFCAVCGNVAQEERCGICRDPRRDATV
ICVVEEPKDVVAIERTREFRGTYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=594293 M4D82_RS15710 WP_249766648.1 3433434..3434033(-) (recR) [Streptomyces sp. RerS4]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAACCCACCGACGTCCGTCGCCTCGCGCACGCGCTGCTGGAGGTCAAGGAGAAGGTCC
GGTTCTGCGCGGTCTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGGGATCTGTCGTGATCCGCGCCGCGACGCCACCGTC
ATCTGTGTGGTCGAGGAGCCGAAGGACGTCGTCGCCATCGAGCGGACGCGCGAGTTCCGGGGCACGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGCCCCGACGACCTGCGCATCCGCGAGCTGCTCGCGCGCCTCGCGGACGGTA
CGGTCACCGAGCTGATCCTGGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTCAAGGTCACCCGCCTGGCCAGCGGGCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
GGGGCGGGCCTTTGAAGGAAGGCGGCTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)

Helix-hairpin-helix motif (HHH)

(2-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.639

97.487

0.533
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467