Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ABVS_RS04830 Genome accession   NZ_CP080576
Coordinates   982959..983594 (+) Length   211 a.a.
NCBI ID   WP_222112294.1    Uniprot ID   -
Organism   Acinetobacter lwoffii strain VS15     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 977959..988594
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABVS_RS04820 (ABVS_1006) - 980081..980893 (-) 813 WP_222112292.1 NAD(P)H-binding protein -
  ABVS_RS04825 (ABVS_1007) recG 980927..982972 (+) 2046 WP_222112293.1 ATP-dependent DNA helicase RecG -
  ABVS_RS04830 (ABVS_1008) comF 982959..983594 (+) 636 WP_222112294.1 ComF family protein Machinery gene
  ABVS_RS04835 (ABVS_1009) - 983599..984000 (-) 402 WP_222112295.1 NUDIX hydrolase -
  ABVS_RS04840 (ABVS_1010) - 984031..984621 (-) 591 WP_222112435.1 TIGR00730 family Rossman fold protein -
  ABVS_RS04845 (ABVS_1011) - 984774..985787 (+) 1014 WP_005248226.1 CorA family divalent cation transporter -
  ABVS_RS04850 (ABVS_1012) - 986035..987267 (+) 1233 WP_004730312.1 transposase -
  ABVS_RS04855 (ABVS_1013) - 987408..987698 (-) 291 WP_222112296.1 STAS domain-containing protein -
  ABVS_RS04860 (ABVS_1014) - 987714..988352 (-) 639 WP_004281529.1 MlaC/ttg2D family ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24447.72 Da        Isoelectric Point: 9.8202

>NTDB_id=594180 ABVS_RS04830 WP_222112294.1 982959..983594(+) (comF) [Acinetobacter lwoffii strain VS15]
MPMFKLLEHGKSWLTRLQPCQLCLTDHQTIHSVCKDCWRQLPWAHQTIQRQEMQFQIACDYAYPMDRLIQLFKYEQKLHL
QNLLAGVLLSLDLPKVSAIVPMPISNERLAERGYNQSLVLAKHVAKQLNVPIWQPVRRMKQHSQKGLSRLERIEDIQSQF
QISTISKLRYRRVLIIDDVVTTGSSIRALSQTLEQLGCQKIYAACLAGTKI

Nucleotide


Download         Length: 636 bp        

>NTDB_id=594180 ABVS_RS04830 WP_222112294.1 982959..983594(+) (comF) [Acinetobacter lwoffii strain VS15]
ATGCCTATGTTTAAATTACTGGAACATGGAAAATCCTGGCTGACCCGCTTACAGCCCTGCCAGCTGTGTCTGACCGATCA
TCAAACCATTCATTCAGTTTGTAAAGATTGCTGGCGACAATTACCCTGGGCACATCAAACCATTCAACGGCAGGAAATGC
AGTTCCAGATTGCCTGCGACTATGCCTACCCGATGGATCGTTTGATTCAACTGTTTAAATATGAACAGAAACTGCATTTG
CAAAATTTACTGGCAGGTGTGCTGTTAAGTTTAGACCTGCCTAAAGTCAGTGCGATAGTACCGATGCCGATCTCGAATGA
GCGTCTGGCCGAGCGCGGTTATAATCAATCTCTAGTGCTGGCCAAACATGTGGCAAAACAGTTGAATGTACCCATCTGGC
AACCTGTTCGACGAATGAAACAACACTCGCAAAAGGGCCTAAGCCGGCTGGAGCGGATTGAAGACATCCAATCACAATTC
CAGATCAGTACCATTTCCAAGCTGCGTTACCGTCGGGTGCTGATTATTGATGATGTGGTGACGACCGGCAGCTCGATTCG
AGCACTGAGCCAAACACTTGAACAACTGGGCTGTCAAAAAATTTATGCAGCCTGTCTGGCCGGTACGAAAATCTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

60.87

98.104

0.597
  comF Acinetobacter baumannii D1279779

60.386

98.104

0.592