Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   JMO07_RS10335 Genome accession   NZ_CP080564
Coordinates   2110163..2110558 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL16278     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2105163..2115558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO07_RS10310 (JMO07_002067) thiE 2105762..2106403 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  JMO07_RS10315 (JMO07_002068) thiM 2106405..2107196 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  JMO07_RS10320 (JMO07_002069) thiD 2107180..2108010 (-) 831 WP_000594951.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  JMO07_RS10325 (JMO07_002070) tenA 2108003..2108692 (-) 690 WP_000396064.1 thiaminase II -
  JMO07_RS10330 (JMO07_002071) sceD 2109079..2109774 (-) 696 WP_000752001.1 lytic transglycosylase SceD -
  JMO07_RS10335 (JMO07_002072) ssb 2110163..2110558 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  JMO07_RS10340 (JMO07_002073) - 2110752..2111192 (+) 441 WP_000846746.1 YwpF-like family protein -
  JMO07_RS10345 (JMO07_002074) fabZ 2111250..2111690 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  JMO07_RS10350 (JMO07_002075) murA 2111724..2112989 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  JMO07_RS10355 (JMO07_002076) - 2113100..2113333 (-) 234 WP_000384523.1 DUF1146 family protein -
  JMO07_RS10360 (JMO07_002077) - 2113465..2113557 (-) 93 WP_031824610.1 hypothetical protein -
  JMO07_RS10365 (JMO07_002078) - 2113893..2114297 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=594042 JMO07_RS10335 WP_000932694.1 2110163..2110558(-) (ssb) [Staphylococcus aureus strain HL16278]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=594042 JMO07_RS10335 WP_000932694.1 2110163..2110558(-) (ssb) [Staphylococcus aureus strain HL16278]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992