Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   JMO07_RS07295 Genome accession   NZ_CP080564
Coordinates   1548878..1549375 (-) Length   165 a.a.
NCBI ID   WP_020978197.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL16278     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1543878..1554375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO07_RS07270 (JMO07_001457) gcvPB 1544040..1545512 (-) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -
  JMO07_RS07275 (JMO07_001458) gcvPA 1545505..1546851 (-) 1347 WP_000019681.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  JMO07_RS07280 (JMO07_001459) gcvT 1546871..1547962 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  JMO07_RS07285 (JMO07_001460) - 1548121..1548645 (-) 525 WP_001015121.1 shikimate kinase -
  JMO07_RS07290 (JMO07_001461) - 1548635..1548781 (-) 147 WP_001789879.1 hypothetical protein -
  JMO07_RS07295 (JMO07_001462) comGF 1548878..1549375 (-) 498 WP_020978197.1 competence type IV pilus minor pilin ComGF Machinery gene
  JMO07_RS07300 (JMO07_001463) comGE 1549293..1549592 (-) 300 WP_000844410.1 hypothetical protein Machinery gene
  JMO07_RS07305 (JMO07_001464) comGD 1549579..1550025 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  JMO07_RS07310 (JMO07_001465) comGC 1550003..1550314 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  JMO07_RS07315 (JMO07_001466) comGB 1550328..1551398 (-) 1071 WP_000776401.1 competence type IV pilus assembly protein ComGB Machinery gene
  JMO07_RS07320 (JMO07_001467) comGA 1551370..1552344 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  JMO07_RS07325 (JMO07_001468) - 1552396..1553019 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  JMO07_RS07330 (JMO07_001469) - 1553016..1553345 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  JMO07_RS07335 (JMO07_001470) - 1553345..1554331 (-) 987 WP_000161314.1 ROK family glucokinase -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19158.95 Da        Isoelectric Point: 10.1964

>NTDB_id=594022 JMO07_RS07295 WP_020978197.1 1548878..1549375(-) (comGF) [Staphylococcus aureus strain HL16278]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILQKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNVQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=594022 JMO07_RS07295 WP_020978197.1 1548878..1549375(-) (comGF) [Staphylococcus aureus strain HL16278]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACAGAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCCATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATGTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

98.788

100

0.988
  comGF Staphylococcus aureus MW2

96.364

100

0.964