Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JMO07_RS04490 Genome accession   NZ_CP080564
Coordinates   941896..942882 (+) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL16278     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 936896..947882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO07_RS04465 (JMO07_000896) opp4B 937109..938071 (+) 963 WP_020978105.1 oligopeptide ABC transporter permease -
  JMO07_RS04470 (JMO07_000897) opp4C 938083..938964 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  JMO07_RS04475 (JMO07_000898) trpS 939006..939995 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  JMO07_RS04480 (JMO07_000899) spxA 940290..940685 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JMO07_RS04485 (JMO07_000900) mecA 941056..941775 (+) 720 WP_001217728.1 adaptor protein MecA -
  JMO07_RS04490 (JMO07_000901) coiA 941896..942882 (+) 987 WP_000959289.1 competence protein CoiA Machinery gene
  JMO07_RS04495 (JMO07_000902) pepF 942930..944738 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  JMO07_RS04500 (JMO07_000903) yjbH 945198..946004 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  JMO07_RS04505 (JMO07_000904) - 946027..946392 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  JMO07_RS04510 (JMO07_000905) - 946496..947089 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  JMO07_RS04515 (JMO07_000906) - 947275..947622 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=594015 JMO07_RS04490 WP_000959289.1 941896..942882(+) (coiA) [Staphylococcus aureus strain HL16278]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=594015 JMO07_RS04490 WP_000959289.1 941896..942882(+) (coiA) [Staphylococcus aureus strain HL16278]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979