Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   JMO13_RS04815 Genome accession   NZ_CP080551
Coordinates   984433..985419 (+) Length   328 a.a.
NCBI ID   WP_000959289.1    Uniprot ID   -
Organism   Staphylococcus aureus strain HL18840     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 979433..990419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMO13_RS04790 (JMO13_000958) opp4B 979646..980608 (+) 963 WP_020978105.1 oligopeptide ABC transporter permease -
  JMO13_RS04795 (JMO13_000959) opp4C 980620..981501 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  JMO13_RS04800 (JMO13_000960) trpS 981543..982532 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  JMO13_RS04805 (JMO13_000961) spxA 982827..983222 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  JMO13_RS04810 (JMO13_000962) mecA 983593..984312 (+) 720 WP_001217728.1 adaptor protein MecA -
  JMO13_RS04815 (JMO13_000963) coiA 984433..985419 (+) 987 WP_000959289.1 competence protein CoiA Machinery gene
  JMO13_RS04820 (JMO13_000964) pepF 985467..987275 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  JMO13_RS04825 (JMO13_000965) yjbH 987735..988541 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  JMO13_RS04830 (JMO13_000966) - 988564..988929 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  JMO13_RS04835 (JMO13_000967) - 989033..989626 (-) 594 WP_000224619.1 CYTH domain-containing protein -
  JMO13_RS04840 (JMO13_000968) - 989812..990159 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38776.37 Da        Isoelectric Point: 9.5881

>NTDB_id=593753 JMO13_RS04815 WP_000959289.1 984433..985419(+) (coiA) [Staphylococcus aureus strain HL18840]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAIYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVGLESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=593753 JMO13_RS04815 WP_000959289.1 984433..985419(+) (coiA) [Staphylococcus aureus strain HL18840]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATATATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGGTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

97.866

100

0.979