Detailed information NTG0059356

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: M062_RS23785
• Genome accession: NC_021577
• Coordinates: 5139143..5140015 (+)
• Length: 290 a.a.
• NCBI ID: WP_016562340.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa RP73
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5134143..5145015

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M062_RS23765 (M062_23815)	-	5134686..5135384 (-)	699	WP_023122772.1	hypothetical protein	-
M062_RS30195	-	5135448..5135987 (-)	540	WP_003116248.1	pilin	-
M062_RS23775 (M062_23820)	pilB	5136216..5137919 (+)	1704	WP_003116249.1	type IV-A pilus assembly ATPase PilB	Machinery gene
M062_RS23780 (M062_23825)	pilC	5137923..5139140 (+)	1218	WP_003116250.1	type II secretion system F family protein	Machinery gene
M062_RS23785 (M062_23830)	pilD	5139143..5140015 (+)	873	WP_016562340.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
M062_RS23790 (M062_23835)	coaE	5140012..5140623 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
M062_RS23795 (M062_23840)	yacG	5140620..5140820 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
M062_RS23800 (M062_23845)	-	5140857..5141066 (-)	210	WP_003094660.1	hypothetical protein	-
M062_RS23805 (M062_23850)	-	5141172..5141861 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
M062_RS23810 (M062_23855)	-	5141858..5142328 (-)	471	WP_003094664.1	hypothetical protein	-
M062_RS23815 (M062_23860)	-	5142325..5142750 (-)	426	WP_016562341.1	GNAT family N-acetyltransferase	-
M062_RS23820 (M062_23865)	-	5142883..5143512 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
M062_RS23825 (M062_23870)	-	5143509..5143958 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
M062_RS23830 (M062_23875)	-	5143984..5144154 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31843.83 Da
• Isoelectric Point: 7.3454

>NTDB_id=59356 M062_RS23785 WP_016562340.1 5139143..5140015(+) (pilD) [Pseudomonas aeruginosa RP73]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLASYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=59356 M062_RS23785 WP_016562340.1 5139143..5140015(+) (pilD) [Pseudomonas aeruginosa RP73]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGCCAGCTACCTGGCGCTGGGCGGCAAGTGTTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTACTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGAGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469