Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KTJ85_RS16805 Genome accession   NZ_CP080509
Coordinates   3293584..3294273 (-) Length   229 a.a.
NCBI ID   WP_196769352.1    Uniprot ID   -
Organism   Bacillus sp. 7D3     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3288584..3299273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ85_RS16770 (KTJ85_16770) fliW 3288675..3289106 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  KTJ85_RS16775 (KTJ85_16775) - 3289136..3289705 (-) 570 WP_115996791.1 DUF6470 family protein -
  KTJ85_RS16780 (KTJ85_16780) flgL 3289796..3290713 (-) 918 WP_115996789.1 flagellar hook-associated protein FlgL -
  KTJ85_RS16785 (KTJ85_16785) flgK 3290725..3292242 (-) 1518 WP_065982450.1 flagellar hook-associated protein FlgK -
  KTJ85_RS16790 (KTJ85_16790) - 3292258..3292740 (-) 483 WP_013353780.1 flagellar protein FlgN -
  KTJ85_RS16795 (KTJ85_16795) flgM 3292755..3293021 (-) 267 WP_212099484.1 flagellar biosynthesis anti-sigma factor FlgM -
  KTJ85_RS16800 (KTJ85_16800) - 3293091..3293510 (-) 420 WP_212099487.1 TIGR03826 family flagellar region protein -
  KTJ85_RS16805 (KTJ85_16805) comFC 3293584..3294273 (-) 690 WP_196769352.1 double zinc ribbon domain-containing protein Machinery gene
  KTJ85_RS16810 (KTJ85_16810) - 3294279..3294563 (-) 285 WP_013353784.1 late competence development ComFB family protein -
  KTJ85_RS16815 (KTJ85_16815) comFA 3294622..3296007 (-) 1386 WP_212099490.1 DEAD/DEAH box helicase Machinery gene
  KTJ85_RS16820 (KTJ85_16820) - 3296114..3296962 (-) 849 WP_212099493.1 DegV family protein -
  KTJ85_RS16825 (KTJ85_16825) degU 3297059..3297748 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KTJ85_RS16830 (KTJ85_16830) degS 3297825..3298988 (-) 1164 WP_065982454.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25365.06 Da        Isoelectric Point: 8.2933

>NTDB_id=593422 KTJ85_RS16805 WP_196769352.1 3293584..3294273(-) (comFC) [Bacillus sp. 7D3]
MNCLLCDSPISRSLTWRSLFSLAPEQEVCSACSNQFEKIEGPVCSLCGRPQQSNEKCADCMARESKTEQRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFTAGFKAAYPANTHILVPIPLSPERLADRGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSGEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=593422 KTJ85_RS16805 WP_196769352.1 3293584..3294273(-) (comFC) [Bacillus sp. 7D3]
CTGAATTGTTTATTGTGTGACTCCCCAATTTCAAGATCACTGACTTGGAGATCTCTATTTTCTCTGGCGCCGGAGCAAGA
GGTATGCAGCGCATGCAGCAATCAATTTGAAAAAATTGAAGGCCCCGTATGCAGTTTATGCGGAAGGCCTCAGCAGTCAA
ACGAAAAATGCGCTGACTGCATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTAT
TTGTATAATGATGCAATGAAGGATTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGATTTTACTGCCGGCTTTAAAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGC
TGGCGGACCGCGGATTCAATCAATCCGAGCTGCTGGCCTCCCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCAGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTCTCCGGAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGC
AGAAGGTATGAACGTCATTTTAATAGACGATATTTATACGACGGGCGCCACACTTCATCAAGCTGCCGAAGCTCTGCTGA
CTGCAGGCAAAGCGTTATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603