Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   KTJ85_RS14920 Genome accession   NZ_CP080509
Coordinates   2913975..2914619 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus sp. 7D3     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2908975..2919619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KTJ85_RS14885 (KTJ85_14885) - 2910160..2910591 (+) 432 WP_045509497.1 Na(+)/H(+) antiporter subunit B -
  KTJ85_RS14890 (KTJ85_14890) - 2910591..2910932 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  KTJ85_RS14895 (KTJ85_14895) - 2910925..2912406 (+) 1482 WP_065982195.1 Na+/H+ antiporter subunit D -
  KTJ85_RS14900 (KTJ85_14900) - 2912412..2912888 (+) 477 WP_212099076.1 Na+/H+ antiporter subunit E -
  KTJ85_RS14905 (KTJ85_14905) - 2912888..2913172 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  KTJ85_RS14910 (KTJ85_14910) mnhG 2913156..2913530 (+) 375 WP_115997042.1 monovalent cation/H(+) antiporter subunit G -
  KTJ85_RS14915 (KTJ85_14915) - 2913570..2913953 (-) 384 WP_212099079.1 hotdog fold thioesterase -
  KTJ85_RS14920 (KTJ85_14920) comA 2913975..2914619 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  KTJ85_RS14925 (KTJ85_14925) - 2914700..2915494 (-) 795 Protein_2948 sensor histidine kinase -
  KTJ85_RS14930 (KTJ85_14930) comP 2915741..2917081 (-) 1341 WP_258567386.1 hypothetical protein Regulator
  KTJ85_RS14935 (KTJ85_14935) comX 2917284..2917454 (-) 171 WP_212099082.1 competence pheromone ComX -
  KTJ85_RS14940 (KTJ85_14940) comQ 2917469..2918377 (-) 909 WP_249199260.1 polyprenyl synthetase family protein Regulator
  KTJ85_RS14945 (KTJ85_14945) degQ 2918508..2918648 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  KTJ85_RS14950 (KTJ85_14950) - 2919113..2919454 (+) 342 WP_115997039.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=593416 KTJ85_RS14920 WP_014472195.1 2913975..2914619(-) (comA) [Bacillus sp. 7D3]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=593416 KTJ85_RS14920 WP_014472195.1 2913975..2914619(-) (comA) [Bacillus sp. 7D3]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAATGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86