Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CA347_RS11240 Genome accession   NC_021554
Coordinates   2209101..2209496 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus CA-347     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2204101..2214496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA347_RS11210 (CA347_2171) thiE 2204699..2205340 (-) 642 WP_000483162.1 thiamine phosphate synthase -
  CA347_RS11215 (CA347_2172) thiM 2205342..2206133 (-) 792 WP_001108491.1 hydroxyethylthiazole kinase -
  CA347_RS11220 (CA347_2173) thiD 2206117..2206947 (-) 831 WP_000594950.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  CA347_RS11225 (CA347_2174) tenA 2206940..2207629 (-) 690 WP_000396063.1 thiaminase II -
  CA347_RS11235 (CA347_2175) sceD 2208017..2208712 (-) 696 WP_000752011.1 lytic transglycosylase SceD -
  CA347_RS11240 (CA347_2176) ssb 2209101..2209496 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  CA347_RS11245 (CA347_2177) - 2209690..2210130 (+) 441 WP_000846751.1 YwpF-like family protein -
  CA347_RS11250 (CA347_2178) fabZ 2210186..2210626 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CA347_RS11255 (CA347_2179) murA 2210660..2211925 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  CA347_RS11260 (CA347_2180) - 2212036..2212269 (-) 234 WP_000384523.1 DUF1146 family protein -
  CA347_RS11270 (CA347_2181) - 2212866..2213270 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=59330 CA347_RS11240 WP_000932694.1 2209101..2209496(-) (ssb) [Staphylococcus aureus CA-347]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=59330 CA347_RS11240 WP_000932694.1 2209101..2209496(-) (ssb) [Staphylococcus aureus CA-347]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACTATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment