Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   K0819_RS02935 Genome accession   NZ_CP080478
Coordinates   599694..600308 (-) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain Vp2015094     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 594694..605308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0819_RS02925 (K0819_02940) aceF 595985..597871 (+) 1887 WP_021453621.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  K0819_RS02930 (K0819_02945) lpdA 598139..599566 (+) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  K0819_RS02935 (K0819_02950) opaR 599694..600308 (-) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  K0819_RS02940 (K0819_02955) hpt 600627..601157 (+) 531 WP_005479701.1 hypoxanthine phosphoribosyltransferase -
  K0819_RS02945 (K0819_02960) can 601231..601899 (-) 669 WP_005462578.1 carbonate dehydratase -
  K0819_RS02950 (K0819_02965) - 602183..603853 (+) 1671 WP_109884266.1 SulP family inorganic anion transporter -
  K0819_RS02955 (K0819_02970) - 604106..605023 (+) 918 WP_021450010.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=593189 K0819_RS02935 WP_005479697.1 599694..600308(-) (opaR) [Vibrio parahaemolyticus strain Vp2015094]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=593189 K0819_RS02935 WP_005479697.1 599694..600308(-) (opaR) [Vibrio parahaemolyticus strain Vp2015094]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGACGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAATCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTTGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGAA
AGAGCTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701