Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   CA347_RS07945 Genome accession   NC_021554
Coordinates   1627923..1628369 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus CA-347     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1622923..1633369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA347_RS07915 (CA347_1533) gcvPA 1623849..1625195 (-) 1347 WP_000019698.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  CA347_RS07920 (CA347_1534) gcvT 1625215..1626306 (-) 1092 WP_016528726.1 glycine cleavage system aminomethyltransferase GcvT -
  CA347_RS07925 (CA347_1535) - 1626465..1626989 (-) 525 WP_001015120.1 shikimate kinase -
  CA347_RS07930 - 1626979..1627125 (-) 147 WP_001789879.1 hypothetical protein -
  CA347_RS07935 (CA347_1536) comGF 1627222..1627719 (-) 498 WP_001796472.1 competence type IV pilus minor pilin ComGF Machinery gene
  CA347_RS07940 (CA347_1537) comGE 1627637..1627936 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  CA347_RS07945 (CA347_1538) comGD 1627923..1628369 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  CA347_RS07950 (CA347_1539) comGC 1628347..1628658 (-) 312 WP_000472255.1 competence type IV pilus major pilin ComGC Machinery gene
  CA347_RS07955 (CA347_1540) comGB 1628672..1629742 (-) 1071 WP_000776409.1 competence type IV pilus assembly protein ComGB Machinery gene
  CA347_RS07960 (CA347_1541) comGA 1629714..1630688 (-) 975 WP_000697223.1 competence type IV pilus ATPase ComGA Machinery gene
  CA347_RS07965 (CA347_1542) - 1630740..1631363 (-) 624 WP_001223009.1 MBL fold metallo-hydrolase -
  CA347_RS07970 (CA347_1543) - 1631360..1631689 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  CA347_RS07975 (CA347_1544) - 1631689..1632675 (-) 987 WP_000161307.1 ROK family glucokinase -
  CA347_RS07980 - 1632672..1632875 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=59311 CA347_RS07945 WP_001796473.1 1627923..1628369(-) (comGD) [Staphylococcus aureus CA-347]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=59311 CA347_RS07945 WP_001796473.1 1627923..1628369(-) (comGD) [Staphylococcus aureus CA-347]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAATCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
CATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment