Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   K1T75_RS11370 Genome accession   NZ_CP080465
Coordinates   2516942..2517556 (+) Length   204 a.a.
NCBI ID   WP_220101974.1    Uniprot ID   -
Organism   Vibrio cholerae strain ICDC-VC3741     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2511942..2522556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K1T75_RS11350 - 2512275..2513192 (-) 918 WP_000271063.1 ABC transporter ATP-binding protein -
  K1T75_RS11355 - 2513576..2515222 (-) 1647 WP_000484911.1 SulP family inorganic anion transporter -
  K1T75_RS11360 can 2515370..2516038 (+) 669 WP_001114117.1 carbonate dehydratase -
  K1T75_RS11365 hpt 2516113..2516646 (-) 534 WP_000683351.1 hypoxanthine phosphoribosyltransferase -
  K1T75_RS11370 hapR 2516942..2517556 (+) 615 WP_220101974.1 quorum-sensing master transcriptional regulator HapR Regulator
  K1T75_RS11375 rsmI 2517770..2518636 (-) 867 WP_000131542.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  K1T75_RS11380 - 2518706..2520511 (+) 1806 WP_001015481.1 penicillin-binding protein activator -
  K1T75_RS11385 - 2520498..2520866 (+) 369 WP_001893625.1 YraN family protein -
  K1T75_RS11390 - 2520870..2521460 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  K1T75_RS11395 - 2521463..2522032 (+) 570 WP_000836326.1 BON domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23779.46 Da        Isoelectric Point: 6.6356

>NTDB_id=593109 K1T75_RS11370 WP_220101974.1 2516942..2517556(+) (hapR) [Vibrio cholerae strain ICDC-VC3741]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKTNLQTLCKEMVKLAMTDCHWLKVWFEWSSASTRDEVWPLFVSTNRTNQLLIRNMFMKAMERGELCEKHD
VDNMASLFHGIFYSIFLQVNRLGEQEAVYKLADSYLNMLCIYKN

Nucleotide


Download         Length: 615 bp        

>NTDB_id=593109 K1T75_RS11370 WP_220101974.1 2516942..2517556(+) (hapR) [Vibrio cholerae strain ICDC-VC3741]
ATGGACGCATCAATCGAAAAACGCCCTCGAACTCGGCTATCGCCTCAAAAACGCAAACTACAACTGATGGAAATCGCGTT
GGAAGTGTTTGCTAAACGCGGCATTGGTCGTGGTGGTCACGCAGATATTGCCGAGATTGCGCAAGTCTCCGTTGCAACAG
TGTTCAACTACTTCCCAACTCGTGAAGACTTGGTTGACGATGTGCTGAATTTTGTGGTTCGTCAGTACTCCAACTTCTTG
ACCGATCACATCGATCTTGATTTGGATGTGAAAACCAACCTACAAACTCTGTGCAAAGAGATGGTGAAATTGGCGATGAC
CGATTGTCACTGGCTCAAAGTCTGGTTTGAGTGGAGTAGTGCTTCAACCCGTGACGAAGTTTGGCCACTGTTTGTTTCCA
CCAACCGAACTAACCAACTGCTGATCAGAAACATGTTTATGAAAGCGATGGAGCGTGGCGAATTGTGTGAGAAACACGAT
GTCGATAACATGGCCAGCCTGTTCCACGGCATCTTCTACTCCATCTTCTTACAAGTGAACCGTTTAGGTGAACAAGAAGC
AGTGTATAAGTTGGCCGATAGCTACCTCAATATGCTGTGTATCTATAAGAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

99.51

100

0.995
  hapR Vibrio cholerae strain A1552

99.51

100

0.995
  opaR Vibrio parahaemolyticus RIMD 2210633

71.859

97.549

0.701