Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   Sta0113_RS00175 Genome accession   NZ_CP080457
Coordinates   31722..32117 (-) Length   131 a.a.
NCBI ID   WP_145436872.1    Uniprot ID   -
Organism   Staphylococcus hominis subsp. hominis strain WiKim0113     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 26722..37117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Sta0113_RS00150 (Sta0113_00150) thiE 27255..27893 (-) 639 WP_048787784.1 thiamine phosphate synthase -
  Sta0113_RS00155 (Sta0113_00155) thiM 27896..28684 (-) 789 WP_017175143.1 hydroxyethylthiazole kinase -
  Sta0113_RS00160 (Sta0113_00160) thiD 28677..29498 (-) 822 WP_017175142.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  Sta0113_RS00165 (Sta0113_00165) tenA 29491..30180 (-) 690 WP_019835613.1 thiaminase II -
  Sta0113_RS00170 (Sta0113_00170) - 30572..31318 (-) 747 WP_017175140.1 transglycosylase family protein -
  Sta0113_RS00175 (Sta0113_00175) ssb 31722..32117 (-) 396 WP_145436872.1 single-stranded DNA-binding protein Machinery gene
  Sta0113_RS00180 (Sta0113_00180) - 32311..32751 (+) 441 WP_017175138.1 YwpF-like family protein -
  Sta0113_RS00185 (Sta0113_00185) fabZ 32801..33238 (-) 438 WP_002448673.1 3-hydroxyacyl-ACP dehydratase FabZ -
  Sta0113_RS00190 (Sta0113_00190) murA 33266..34531 (-) 1266 WP_049419939.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  Sta0113_RS00195 (Sta0113_00195) - 34638..34868 (-) 231 WP_017175136.1 DUF1146 family protein -
  Sta0113_RS00200 (Sta0113_00200) - 35182..35583 (-) 402 WP_002448708.1 F0F1 ATP synthase subunit epsilon -
  Sta0113_RS00205 (Sta0113_00205) atpD 35605..37017 (-) 1413 WP_017175135.1 F0F1 ATP synthase subunit beta -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15138.25 Da        Isoelectric Point: 5.9389

>NTDB_id=592959 Sta0113_RS00175 WP_145436872.1 31722..32117(-) (ssb) [Staphylococcus hominis subsp. hominis strain WiKim0113]
MLNKIVIVGRMTKDAKIYDNEEVKIATFSVATERNYKDENDEIACDYIFCKAFGKMASNIEKYTSQGSLVGITGQMRSRK
YEKEKQTHFVTELYVETIKFMSPKLNNEKLSDSSLNTDTYSFDNLELMNIK

Nucleotide


Download         Length: 396 bp        

>NTDB_id=592959 Sta0113_RS00175 WP_145436872.1 31722..32117(-) (ssb) [Staphylococcus hominis subsp. hominis strain WiKim0113]
ATGTTAAATAAGATAGTAATCGTTGGTCGTATGACTAAAGATGCAAAAATTTATGATAATGAGGAGGTGAAAATCGCAAC
GTTTAGTGTGGCTACTGAACGCAATTATAAAGATGAAAATGATGAAATAGCGTGTGATTATATATTTTGTAAAGCATTTG
GTAAGATGGCTAGCAACATTGAAAAATATACTTCTCAAGGATCTTTAGTAGGTATTACTGGCCAAATGCGTTCTCGTAAA
TATGAAAAGGAAAAACAAACTCACTTTGTCACAGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATTAAATAA
TGAAAAACTCTCAGATAGCTCACTAAATACAGACACTTATTCATTTGATAATCTCGAATTAATGAATATAAAATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

100

0.756
  ssb Staphylococcus aureus MW2

74.809

100

0.748