Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   FBMFHHBO_RS08780 Genome accession   NZ_CP080452
Coordinates   1832278..1832658 (+) Length   126 a.a.
NCBI ID   WP_000836914.1    Uniprot ID   A0A098SJS3
Organism   Acinetobacter baumannii strain MRSN 56     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827278..1837658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FBMFHHBO_RS08750 (FBMFHHBO_08750) kdsB 1828181..1828942 (+) 762 WP_000680692.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  FBMFHHBO_RS08755 (FBMFHHBO_08755) - 1828954..1829934 (+) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  FBMFHHBO_RS08760 (FBMFHHBO_08760) - 1829946..1830287 (+) 342 WP_001183027.1 PilZ domain-containing protein -
  FBMFHHBO_RS08765 (FBMFHHBO_08765) - 1830305..1831078 (+) 774 WP_000497300.1 TatD family hydrolase -
  FBMFHHBO_RS08770 (FBMFHHBO_08770) - 1831116..1831724 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  FBMFHHBO_RS08775 (FBMFHHBO_08775) - 1831734..1832288 (+) 555 WP_000841373.1 type II secretion system protein -
  FBMFHHBO_RS08780 (FBMFHHBO_08780) xcpV 1832278..1832658 (+) 381 WP_000836914.1 type II secretion system minor pseudopilin GspI Machinery gene
  FBMFHHBO_RS08785 (FBMFHHBO_08785) xcpW 1832658..1833359 (+) 702 WP_000594579.1 type II secretion system minor pseudopilin GspJ Machinery gene
  FBMFHHBO_RS08790 (FBMFHHBO_08790) gspK 1833359..1834318 (+) 960 WP_000301478.1 type II secretion system minor pseudopilin GspK -
  FBMFHHBO_RS08795 (FBMFHHBO_08795) - 1834548..1835144 (+) 597 WP_000908449.1 6-pyruvoyl trahydropterin synthase family protein -
  FBMFHHBO_RS08800 (FBMFHHBO_08800) ung 1835195..1835908 (+) 714 WP_001177527.1 uracil-DNA glycosylase -
  FBMFHHBO_RS08805 (FBMFHHBO_08805) - 1835905..1837029 (+) 1125 WP_003114973.1 enoyl-CoA hydratase/isomerase family protein -
  FBMFHHBO_RS08810 (FBMFHHBO_08810) tadA 1837036..1837539 (+) 504 WP_001997771.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14074.34 Da        Isoelectric Point: 10.0341

>NTDB_id=592935 FBMFHHBO_RS08780 WP_000836914.1 1832278..1832658(+) (xcpV) [Acinetobacter baumannii strain MRSN 56]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKRKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=592935 FBMFHHBO_RS08780 WP_000836914.1 1832278..1832658(+) (xcpV) [Acinetobacter baumannii strain MRSN 56]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCTGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACTCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATC
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGAG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)

Type II secretion system (T2SS), protein I (T2SSI)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A098SJS3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992