Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M2I98_RS00310 Genome accession   NZ_CP096958
Coordinates   69881..70504 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain NY11210     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 64881..75504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I98_RS00285 (M2I98_00285) - 65663..66586 (-) 924 WP_023131043.1 choline ABC transporter substrate-binding protein -
  M2I98_RS00290 (M2I98_00290) betC 66603..68114 (-) 1512 WP_003120673.1 choline-sulfatase -
  M2I98_RS00295 (M2I98_00295) - 68242..69141 (+) 900 WP_221345472.1 LysR family transcriptional regulator -
  M2I98_RS00300 (M2I98_00300) - 69152..69505 (+) 354 WP_023131042.1 DOPA 4,5-dioxygenase family protein -
  M2I98_RS00305 (M2I98_00305) - 69508..69873 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  M2I98_RS00310 (M2I98_00310) letA 69881..70504 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  M2I98_RS00315 (M2I98_00315) trpA 70690..71496 (-) 807 WP_025324594.1 tryptophan synthase subunit alpha -
  M2I98_RS00320 (M2I98_00320) trpB 71493..72701 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  M2I98_RS00325 (M2I98_00325) trpI 72805..73692 (+) 888 WP_003122282.1 trpBA operon transcriptional activator TrpI -
  M2I98_RS00330 (M2I98_00330) - 73793..74008 (+) 216 WP_003097345.1 dodecin -
  M2I98_RS00335 (M2I98_00335) - 74192..74419 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=592760 M2I98_RS00310 WP_003111192.1 69881..70504(-) (letA) [Pseudomonas aeruginosa strain NY11210]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=592760 M2I98_RS00310 WP_003111192.1 69881..70504(-) (letA) [Pseudomonas aeruginosa strain NY11210]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362