Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K0H61_RS15200 Genome accession   NZ_CP080413
Coordinates   3554606..3555310 (-) Length   234 a.a.
NCBI ID   WP_220050323.1    Uniprot ID   -
Organism   Shewanella acanthi strain FJAT-51860     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3549606..3560310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H61_RS15180 (K0H61_15180) - 3549705..3550109 (-) 405 WP_220050319.1 hypothetical protein -
  K0H61_RS15185 (K0H61_15185) - 3550427..3551425 (-) 999 WP_220050320.1 NAD(P)H-quinone oxidoreductase -
  K0H61_RS15190 (K0H61_15190) - 3551435..3552805 (-) 1371 WP_220050321.1 leucine-rich repeat-containing protein kinase family protein -
  K0H61_RS15195 (K0H61_15195) - 3552973..3554394 (+) 1422 WP_220050322.1 LysM peptidoglycan-binding domain-containing protein -
  K0H61_RS15200 (K0H61_15200) ssb 3554606..3555310 (-) 705 WP_220050323.1 single-stranded DNA-binding protein Machinery gene
  K0H61_RS15205 (K0H61_15205) - 3555418..3556785 (-) 1368 WP_220050324.1 MFS transporter -
  K0H61_RS15210 (K0H61_15210) uvrA 3557205..3560057 (+) 2853 WP_220050325.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 25337.81 Da        Isoelectric Point: 5.7610

>NTDB_id=592654 K0H61_RS15200 WP_220050323.1 3554606..3555310(-) (ssb) [Shewanella acanthi strain FJAT-51860]
MASRGVNKVILVGNLGQDPEVRYMPNGNAVANITVATSESWKDQQGQQQERTEWHRVVLFGKLAEITGEYLRKGSQVYLE
GKLQTRKWKDQSGQDRYTTEIVVDQGGSMQMLGGRAQGQGQGAPMGGMPQNSGYQSAPAQTAPAQNQYAPAQQQAPAYQA
PAQNQYAPAQQSYGQQQQAAQSHAQPQQGGYAPKPQAAAPAYQAPAAPAQRPAPQPQQNFTPDLDDGWDDDIPF

Nucleotide


Download         Length: 705 bp        

>NTDB_id=592654 K0H61_RS15200 WP_220050323.1 3554606..3555310(-) (ssb) [Shewanella acanthi strain FJAT-51860]
ATGGCCAGTCGTGGTGTTAACAAGGTAATTTTGGTTGGCAATTTGGGACAAGATCCAGAAGTGCGTTACATGCCAAACGG
TAACGCTGTTGCGAACATCACAGTTGCAACCAGCGAATCGTGGAAAGACCAACAGGGTCAACAGCAGGAGCGTACAGAGT
GGCACCGTGTGGTTCTATTCGGTAAGTTGGCGGAAATTACTGGCGAATATTTACGTAAAGGTTCGCAAGTTTACTTAGAA
GGCAAACTGCAAACCCGTAAATGGAAGGATCAAAGCGGTCAAGATCGTTACACCACTGAAATCGTGGTAGATCAAGGTGG
TAGCATGCAAATGCTCGGCGGCCGTGCTCAAGGCCAAGGCCAAGGTGCTCCAATGGGTGGCATGCCACAAAACTCTGGCT
ATCAGTCTGCTCCTGCTCAGACTGCGCCAGCGCAAAACCAATACGCGCCAGCTCAGCAGCAAGCGCCTGCATATCAAGCG
CCAGCGCAAAACCAGTATGCACCAGCTCAGCAAAGCTATGGTCAACAGCAACAGGCTGCGCAGTCTCATGCTCAGCCACA
GCAAGGTGGTTATGCGCCTAAACCTCAGGCAGCAGCACCTGCTTACCAAGCGCCAGCAGCTCCTGCGCAGCGTCCTGCCC
CGCAGCCACAGCAAAACTTCACTCCAGATTTAGATGACGGTTGGGATGACGATATCCCGTTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

54.008

100

0.547
  ssb Glaesserella parasuis strain SC1401

46.753

98.718

0.462