Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   K0H59_RS06050 Genome accession   NZ_CP080411
Coordinates   1347270..1348343 (+) Length   357 a.a.
NCBI ID   WP_011716225.1    Uniprot ID   A0A220UPF0
Organism   Shewanella sp. FJAT-51649     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342270..1353343
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K0H59_RS06040 (K0H59_06040) rpoS 1343139..1344119 (+) 981 WP_011621912.1 RNA polymerase sigma factor RpoS -
  K0H59_RS06045 (K0H59_06045) mutS 1344302..1346887 (-) 2586 WP_220054961.1 DNA mismatch repair protein MutS -
  K0H59_RS06050 (K0H59_06050) recA 1347270..1348343 (+) 1074 WP_011716225.1 recombinase RecA Machinery gene
  K0H59_RS06055 (K0H59_06055) - 1348361..1348828 (+) 468 WP_408733577.1 regulatory protein RecX -
  K0H59_RS06060 (K0H59_06060) alaS 1349104..1351728 (+) 2625 WP_220054962.1 alanine--tRNA ligase -
  K0H59_RS06065 (K0H59_06065) - 1351738..1352994 (+) 1257 WP_220054963.1 aspartate kinase -
  K0H59_RS06070 (K0H59_06070) csrA 1353113..1353310 (+) 198 WP_006082602.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 357 a.a.        Molecular weight: 38144.50 Da        Isoelectric Point: 4.8761

>NTDB_id=592595 K0H59_RS06050 WP_011716225.1 1347270..1348343(+) (recA) [Shewanella sp. FJAT-51649]
MKVDPNKEKALAAVLSQIEKQFGKGSIMKLGEDRSMDVETISTGSLSLDVALGAGGLPMGRIVEIYGPESSGKTTLTLEV
IAAAQREGKTCAFIDAEHALDPIYAKKLGVDIDNLLCSQPDTGEQALEICDALTRSGAVDVIIVDSVAALTPKAEIEGEI
GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVG
NETRVKVVKNKVAAPFKQAEFQILYGQGINRTGELVDLGVAHKLIEKAGAWYSYKGDKIGQGRANAGKYLTENPAIAAEI
DKTLRELLLSNPSAMSSSSSDDENSEGNVDFETGEVF

Nucleotide


Download         Length: 1074 bp        

>NTDB_id=592595 K0H59_RS06050 WP_011716225.1 1347270..1348343(+) (recA) [Shewanella sp. FJAT-51649]
ATGAAGGTCGATCCAAACAAAGAGAAAGCACTTGCTGCGGTATTGAGCCAAATTGAAAAGCAATTTGGTAAAGGCTCCAT
CATGAAGCTGGGCGAAGACCGCTCTATGGATGTTGAGACTATTTCTACTGGTTCACTTTCCCTTGACGTCGCCTTAGGGG
CTGGCGGTTTACCAATGGGACGTATCGTTGAGATCTATGGTCCCGAATCATCAGGTAAAACGACGCTGACATTAGAAGTG
ATTGCCGCTGCTCAGCGCGAAGGTAAAACCTGTGCCTTTATCGACGCCGAGCACGCGCTAGACCCTATCTATGCTAAAAA
GTTAGGCGTAGATATCGATAACTTACTGTGTTCACAACCCGATACCGGCGAACAAGCCCTTGAGATCTGTGATGCGTTAA
CCCGTTCTGGCGCGGTAGATGTGATCATCGTTGACTCGGTTGCGGCATTAACACCCAAAGCGGAAATTGAAGGTGAAATT
GGTGACTCACACATGGGCCTAGCGGCGCGTATGATGAGCCAAGCGATGCGTAAGCTCGCGGGTAACCTCAAGCAATCGAA
TACACTATTAATCTTCATTAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACAACGGGCGGTA
ACGCGCTGAAGTTCTACGCTTCTGTTCGTCTCGATATTCGCCGTACTGGTGCTATCAAAGAAGGCGATGAAGTGGTGGGT
AACGAGACGCGCGTTAAAGTGGTTAAAAACAAGGTTGCCGCGCCGTTTAAACAAGCTGAGTTCCAAATTCTTTACGGTCA
AGGTATCAACCGTACTGGTGAGTTAGTCGATTTAGGTGTTGCCCATAAACTGATTGAAAAAGCCGGTGCATGGTACAGCT
ACAAGGGTGACAAGATTGGTCAAGGCCGTGCAAATGCCGGTAAATATCTGACTGAAAACCCAGCAATTGCCGCTGAAATC
GATAAAACACTGCGTGAGTTACTGCTGAGTAACCCAAGCGCTATGTCTTCATCTTCTTCTGATGATGAAAACAGCGAAGG
CAATGTTGATTTCGAAACAGGCGAAGTATTCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A220UPF0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

82.609

96.639

0.798
  recA Vibrio cholerae O1 biovar El Tor strain E7946

82.609

96.639

0.798
  recA Pseudomonas stutzeri DSM 10701

72.727

95.518

0.695
  recA Glaesserella parasuis strain SC1401

68.857

98.039

0.675
  recA Acinetobacter baumannii D1279779

70.088

95.518

0.669
  recA Acinetobacter baylyi ADP1

70.088

95.518

0.669
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae MS11

69.35

90.476

0.627
  recA Neisseria gonorrhoeae strain FA1090

69.35

90.476

0.627
  recA Ralstonia pseudosolanacearum GMI1000

70.794

88.235

0.625
  recA Streptococcus pneumoniae D39

63.415

91.877

0.583
  recA Streptococcus pneumoniae TIGR4

63.415

91.877

0.583
  recA Streptococcus pneumoniae R6

63.415

91.877

0.583
  recA Streptococcus pneumoniae Rx1

63.415

91.877

0.583
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.29

96.639

0.583
  recA Streptococcus mitis SK321

62.805

91.877

0.577
  recA Streptococcus mitis NCTC 12261

62.805

91.877

0.577
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.961

93.277

0.569
  recA Streptococcus pyogenes NZ131

61.585

91.877

0.566
  recA Helicobacter pylori strain NCTC11637

59.821

94.118

0.563
  recA Streptococcus mutans UA159

61.92

90.476

0.56
  recA Helicobacter pylori 26695

59.524

94.118

0.56
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

89.916

0.56
  recA Lactococcus lactis subsp. cremoris KW2

60.061

91.877

0.552
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

89.356

0.549
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.27

88.235

0.541