Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   M2I94_RS00250 Genome accession   NZ_CP096950
Coordinates   52309..52932 (-) Length   207 a.a.
NCBI ID   WP_003111192.1    Uniprot ID   A0A0H2ZJZ4
Organism   Pseudomonas aeruginosa strain NY5532     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 47309..57932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2I94_RS00215 (M2I94_00215) dndB 47891..48991 (-) 1101 WP_237754639.1 DNA sulfur modification protein DndB -
  M2I94_RS00220 (M2I94_00220) - 49509..49910 (+) 402 WP_202070548.1 hypothetical protein -
  M2I94_RS00225 (M2I94_00225) - 49907..50191 (+) 285 WP_034026426.1 hypothetical protein -
  M2I94_RS00230 (M2I94_00230) - 50304..50495 (+) 192 WP_034026424.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
  M2I94_RS00235 (M2I94_00235) - 51105..51329 (+) 225 WP_153575029.1 hypothetical protein -
  M2I94_RS00240 (M2I94_00240) - 51568..51957 (+) 390 WP_034026423.1 DOPA 4,5-dioxygenase family protein -
  M2I94_RS00245 (M2I94_00245) - 51936..52301 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  M2I94_RS00250 (M2I94_00250) letA 52309..52932 (-) 624 WP_003111192.1 response regulator transcription factor Regulator
  M2I94_RS00255 (M2I94_00255) trpA 53118..53924 (-) 807 WP_003115801.1 tryptophan synthase subunit alpha -
  M2I94_RS00260 (M2I94_00260) trpB 53921..55129 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  M2I94_RS00265 (M2I94_00265) trpI 55233..56120 (+) 888 WP_003114633.1 trpBA operon transcriptional activator TrpI -
  M2I94_RS00270 (M2I94_00270) - 56221..56436 (+) 216 WP_003097345.1 dodecin -
  M2I94_RS00275 (M2I94_00275) - 56620..56847 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22859.66 Da        Isoelectric Point: 10.1491

>NTDB_id=592457 M2I94_RS00250 WP_003111192.1 52309..52932(-) (letA) [Pseudomonas aeruginosa strain NY5532]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKIDGLEVIARLKSLKLDTKVLVL
TRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLAN
GNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 624 bp        

>NTDB_id=592457 M2I94_RS00250 WP_003111192.1 52309..52932(-) (letA) [Pseudomonas aeruginosa strain NY5532]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTCCTG
ACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAACCT
CTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCAACC
AGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCCAAC
GGCAATACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCATGCT
GAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Bacterial regulatory proteins, luxR family (GerE)

(145-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZJZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.377

100

0.362
  letA Legionella pneumophila strain ERS1305867

35.377

100

0.362