Detailed information NTG0592383

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: KY494_RS13215
• Genome accession: NZ_CP080377
• Coordinates: 2945227..2946096 (+)
• Length: 289 a.a.
• NCBI ID: WP_219135119.1
• Uniprot ID: -
• Organism: Janthinobacterium sp. PAMC25594
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2940227..2951096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KY494_RS13200 (KY494_13200)	-	2941238..2942209 (-)	972	WP_219891235.1	helix-turn-helix transcriptional regulator	-
KY494_RS13205 (KY494_13205)	-	2942380..2943852 (+)	1473	WP_258194841.1	DHA2 family efflux MFS transporter permease subunit	-
KY494_RS13210 (KY494_13210)	-	2943926..2945122 (+)	1197	WP_219891236.1	type II secretion system F family protein	-
KY494_RS13215 (KY494_13215)	pilD	2945227..2946096 (+)	870	WP_219135119.1	A24 family peptidase	Machinery gene
KY494_RS13220 (KY494_13220)	coaE	2946119..2946766 (+)	648	WP_219135118.1	dephospho-CoA kinase	-
KY494_RS13225 (KY494_13225)	zapD	2946829..2947584 (+)	756	WP_219891237.1	cell division protein ZapD	-
KY494_RS13230 (KY494_13230)	yacG	2947596..2947784 (+)	189	WP_101483945.1	DNA gyrase inhibitor YacG	-
KY494_RS13235 (KY494_13235)	-	2947798..2948220 (-)	423	WP_219891238.1	hypothetical protein	-
KY494_RS13240 (KY494_13240)	-	2948227..2948436 (-)	210	WP_219891239.1	DNA-binding protein	-
KY494_RS13245 (KY494_13245)	-	2948552..2948974 (-)	423	WP_219891240.1	NUDIX domain-containing protein	-
KY494_RS13250 (KY494_13250)	-	2948971..2949852 (-)	882	WP_219135112.1	ATP-binding protein	-
KY494_RS13255 (KY494_13255)	argJ	2949849..2951087 (-)	1239	WP_219891241.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31049.91 Da
• Isoelectric Point: 7.7410

>NTDB_id=592383 KY494_RS13215 WP_219135119.1 2945227..2946096(+) (pilD) [Janthinobacterium sp. PAMC25594]
MLQDTLLFAAPGNLPVALVAALFGLIVGSFLNVVIHRVPKMMQRESDNYVAEESGLPLPHTDRYNLMLPHSNCTACGHRI
TAMENIPVISYLLLRGKCSACKAPISVRYPLVELLTGALSALLIWHFGSGWTGLATLVFAWLLIAMTFIDADTQMLPDDL
TFPLLWAGLLVNINGTFVPLQDAVIGAAAGYLALWAVYWAFKLATGKEGMGYGDFKLLAALGAWLGWTMLPTIILLSSLV
GAVVGIGLIVFARRGRDKPIPFGPYLAAAGLIALLYRTPLSQLTLGLAG

Nucleotide

• Length: 870 bp

>NTDB_id=592383 KY494_RS13215 WP_219135119.1 2945227..2946096(+) (pilD) [Janthinobacterium sp. PAMC25594]
ATGCTGCAAGATACCCTGCTGTTCGCCGCCCCCGGCAACCTGCCCGTCGCCCTCGTCGCAGCCCTGTTCGGCCTGATCGT
CGGCAGCTTCCTCAACGTGGTGATCCACCGCGTGCCGAAAATGATGCAGCGCGAATCCGATAATTATGTGGCGGAAGAAA
GCGGCCTGCCCTTGCCGCATACGGACCGCTACAACCTGATGCTGCCACACTCGAACTGTACCGCTTGCGGCCACCGCATC
ACGGCCATGGAGAACATCCCCGTCATCAGTTACCTGCTGCTGCGCGGCAAGTGCAGCGCCTGCAAGGCCCCCATCTCCGT
GCGCTATCCGCTGGTGGAACTGCTGACGGGCGCGCTGTCGGCCCTGTTGATCTGGCACTTCGGCAGCGGCTGGACGGGCC
TGGCCACGCTCGTGTTTGCCTGGCTGCTGATCGCCATGACCTTCATCGATGCCGACACGCAAATGCTGCCCGACGACCTG
ACCTTCCCGCTGCTGTGGGCGGGCTTGCTGGTGAATATCAACGGCACCTTCGTGCCCCTGCAAGACGCCGTCATCGGCGC
GGCCGCCGGCTACCTGGCCCTGTGGGCCGTGTACTGGGCCTTCAAGCTGGCGACAGGCAAGGAGGGAATGGGCTATGGTG
ACTTCAAATTGCTGGCGGCGCTCGGTGCGTGGCTGGGCTGGACCATGTTGCCGACGATTATATTGTTGTCGTCGCTGGTC
GGCGCCGTGGTTGGCATCGGCCTGATCGTCTTCGCCAGGCGCGGGCGCGATAAGCCGATTCCGTTCGGCCCCTACCTGGC
GGCGGCGGGCCTGATCGCCCTCTTGTACCGCACGCCCCTGTCGCAGCTGACGCTGGGCCTGGCCGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.636	95.156	0.529
pilD	Vibrio campbellii strain DS40M4	55.556	90.311	0.502
pilD	Acinetobacter baumannii D1279779	47.405	100	0.474
pilD	Neisseria gonorrhoeae MS11	52.734	88.581	0.467
pilD	Acinetobacter nosocomialis M2	46.367	100	0.464