Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   K6J54_RS03585 Genome accession   NZ_AP018766
Coordinates   716504..717118 (+) Length   204 a.a.
NCBI ID   WP_005659994.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-II-3 isolate 13H41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 711504..722118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J54_RS03555 (CHBNII3_06770) - 711640..712461 (-) 822 WP_105876685.1 IS3 family transposase -
  K6J54_RS03560 (CHBNII3_06780) - 712446..712799 (-) 354 WP_005655582.1 helix-turn-helix domain-containing protein -
  K6J54_RS03565 (CHBNII3_06790) - 713097..714365 (+) 1269 WP_005689509.1 NRAMP family divalent metal transporter -
  K6J54_RS03570 (CHBNII3_06800) nudB 714467..714922 (+) 456 WP_032824937.1 dihydroneopterin triphosphate diphosphatase -
  K6J54_RS03575 (CHBNII3_06810) - 715082..715822 (+) 741 WP_005689504.1 YebC/PmpR family DNA-binding transcriptional regulator -
  K6J54_RS03580 (CHBNII3_06820) ruvC 715869..716441 (+) 573 WP_005659992.1 crossover junction endodeoxyribonuclease RuvC -
  K6J54_RS03585 (CHBNII3_06830) ruvA 716504..717118 (+) 615 WP_005659994.1 Holliday junction branch migration protein RuvA Machinery gene
  K6J54_RS03590 (CHBNII3_06840) ruvB 717126..718133 (+) 1008 WP_005649027.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  K6J54_RS03595 (CHBNII3_06850) - 718188..718472 (-) 285 WP_061724188.1 DUF5339 domain-containing protein -
  K6J54_RS03600 (CHBNII3_06860) xerD 718645..719538 (-) 894 WP_005668988.1 site-specific tyrosine recombinase XerD -
  K6J54_RS03605 (CHBNII3_06870) - 719569..720735 (-) 1167 WP_061724186.1 3-phenylpropionate MFS transporter -
  K6J54_RS03610 (CHBNII3_06880) proC 720735..721550 (-) 816 WP_005662973.1 pyrroline-5-carboxylate reductase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22547.27 Da        Isoelectric Point: 6.5030

>NTDB_id=59231 K6J54_RS03585 WP_005659994.1 716504..717118(+) (ruvA) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MIGRLQGILLEKQPPEILLNVQGVGYELLLPMTSFYDLPEIGQETTLFTHLVVREDAHLLFGFAQKTDRTLFRELIKTNG
VGPKLALAILSAMSVEQFAYAIEREELSKLTKIPGVGKKTAERLLVELKGKFKGVKQSDFFVESTHIPLSPSIESHSESS
SDEAISALIALGYKPAEAEKMVKRVAKPELTSEQVIREALKAAL

Nucleotide


Download         Length: 615 bp        

>NTDB_id=59231 K6J54_RS03585 WP_005659994.1 716504..717118(+) (ruvA) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGATCGGTCGCTTACAAGGCATTCTTTTAGAAAAACAACCTCCAGAAATTTTACTCAATGTGCAAGGCGTAGGCTATGA
ATTGCTTTTGCCTATGACGAGTTTCTATGATTTACCAGAAATTGGACAAGAAACTACTTTATTCACCCATCTTGTTGTTC
GGGAAGATGCTCACTTACTCTTTGGATTTGCCCAGAAAACAGACCGCACTTTATTTCGTGAATTAATTAAAACAAATGGG
GTGGGGCCTAAATTAGCCTTAGCGATTTTATCCGCCATGTCGGTCGAACAATTTGCCTATGCAATAGAGAGAGAAGAACT
TTCTAAACTCACTAAAATTCCAGGTGTTGGCAAAAAAACAGCTGAACGTTTGTTAGTTGAACTCAAAGGTAAATTTAAAG
GCGTAAAACAAAGTGATTTCTTTGTAGAAAGTACGCATATTCCATTATCCCCATCTATTGAATCCCACTCGGAAAGTTCA
TCTGATGAAGCAATTTCAGCCTTGATTGCTTTAGGTTATAAACCTGCAGAAGCAGAAAAAATGGTAAAACGCGTTGCTAA
ACCTGAATTAACCAGTGAACAAGTTATTCGTGAAGCATTAAAAGCCGCATTGTAG

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(161-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

36.364

100

0.373