Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | K6J54_RS03590 | Genome accession | NZ_AP018766 |
| Coordinates | 717126..718133 (+) | Length | 335 a.a. |
| NCBI ID | WP_005649027.1 | Uniprot ID | Q4QNM6 |
| Organism | Haemophilus influenzae strain CHBN-II-3 isolate 13H41 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 712126..723133
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J54_RS03560 (CHBNII3_06780) | - | 712446..712799 (-) | 354 | WP_005655582.1 | helix-turn-helix domain-containing protein | - |
| K6J54_RS03565 (CHBNII3_06790) | - | 713097..714365 (+) | 1269 | WP_005689509.1 | NRAMP family divalent metal transporter | - |
| K6J54_RS03570 (CHBNII3_06800) | nudB | 714467..714922 (+) | 456 | WP_032824937.1 | dihydroneopterin triphosphate diphosphatase | - |
| K6J54_RS03575 (CHBNII3_06810) | - | 715082..715822 (+) | 741 | WP_005689504.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| K6J54_RS03580 (CHBNII3_06820) | ruvC | 715869..716441 (+) | 573 | WP_005659992.1 | crossover junction endodeoxyribonuclease RuvC | - |
| K6J54_RS03585 (CHBNII3_06830) | ruvA | 716504..717118 (+) | 615 | WP_005659994.1 | Holliday junction branch migration protein RuvA | Machinery gene |
| K6J54_RS03590 (CHBNII3_06840) | ruvB | 717126..718133 (+) | 1008 | WP_005649027.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| K6J54_RS03595 (CHBNII3_06850) | - | 718188..718472 (-) | 285 | WP_061724188.1 | DUF5339 domain-containing protein | - |
| K6J54_RS03600 (CHBNII3_06860) | xerD | 718645..719538 (-) | 894 | WP_005668988.1 | site-specific tyrosine recombinase XerD | - |
| K6J54_RS03605 (CHBNII3_06870) | - | 719569..720735 (-) | 1167 | WP_061724186.1 | 3-phenylpropionate MFS transporter | - |
| K6J54_RS03610 (CHBNII3_06880) | proC | 720735..721550 (-) | 816 | WP_005662973.1 | pyrroline-5-carboxylate reductase | - |
| K6J54_RS03615 (CHBNII3_06890) | rdgC | 721616..722524 (+) | 909 | WP_005662977.1 | recombination-associated protein RdgC | - |
| K6J54_RS03620 (CHBNII3_06900) | ruvX | 722574..722993 (-) | 420 | WP_005648994.1 | Holliday junction resolvase RuvX | - |
Sequence
Protein
Download Length: 335 a.a. Molecular weight: 37076.41 Da Isoelectric Point: 4.7793
>NTDB_id=59232 K6J54_RS03590 WP_005649027.1 717126..718133(+) (ruvB) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
MIEADRIISGQAKVDEDVIDRAIRPKLLADYVGQPQVREQMDIFIKAAKLRQDALDHLLIFGPPGLGKTTLANIVANEMG
VNIRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPAIEEVLYPAMEDYQLDIMIGEGPAARSIKLDLPPFTLVGA
TTRAGSLTSPLRDRFGIVQRLEFYSVEDLTSIVARSADCLNLELEQQAAFEVARRSRGTPRIANRLLRRVRDYADVRNGG
IISINVAKQALSMLDVDDAGFDYLDRKLLSAVIERFDGGPVGLDNLAAAIGEERDTIEDVLEPYLIQQGFLQRTPRGRIA
TSQTYRHFGLQKLSD
Nucleotide
Download Length: 1008 bp
>NTDB_id=59232 K6J54_RS03590 WP_005649027.1 717126..718133(+) (ruvB) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGATTGAAGCAGATAGAATTATTAGTGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGTGAAGGGCCTGCCGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCACCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCGGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGATGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGTGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGAGGTCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG
ATGATTGAAGCAGATAGAATTATTAGTGGGCAAGCTAAGGTTGATGAAGATGTTATCGACCGTGCTATTCGTCCTAAACT
ATTAGCAGATTATGTTGGGCAGCCGCAAGTACGCGAGCAGATGGATATTTTCATCAAGGCAGCCAAACTACGTCAAGATG
CCTTAGATCATTTATTGATTTTTGGCCCTCCAGGTTTGGGAAAAACAACGCTTGCTAATATTGTGGCAAATGAAATGGGC
GTGAATATTCGTACGACGTCAGGGCCTGTATTAGAAAAAGCGGGAGATTTAGCCGCAATGCTAACCAATCTTGAACCGCA
TGATGTGTTATTTATTGATGAAATCCATCGACTTTCCCCTGCTATTGAAGAAGTCCTTTATCCAGCAATGGAAGACTATC
AGTTGGATATTATGATTGGTGAAGGGCCTGCCGCTCGTTCCATTAAATTAGATTTGCCCCCTTTTACTTTGGTTGGTGCG
ACCACTAGAGCGGGTTCTTTGACTTCACCATTGCGTGATCGTTTTGGTATTGTGCAACGTTTGGAATTCTATTCTGTAGA
AGATTTAACATCTATCGTTGCAAGAAGTGCGGACTGTTTAAATCTTGAATTAGAACAACAAGCCGCTTTCGAGGTGGCTC
GTCGTTCACGAGGCACGCCTCGAATTGCAAACCGTTTATTACGACGTGTGCGTGATTATGCGGATGTACGTAATGGCGGT
ATTATTTCTATAAATGTGGCAAAACAAGCACTTTCAATGCTAGATGTAGATGATGCTGGATTTGATTATTTAGATAGAAA
GTTGTTGTCTGCAGTTATTGAGCGTTTTGATGGTGGCCCTGTGGGACTAGATAATCTTGCTGCTGCAATTGGTGAAGAAC
GTGATACCATTGAAGATGTGTTAGAGCCTTATTTGATTCAACAGGGGTTTCTACAAAGAACGCCGCGAGGTCGTATTGCA
ACATCGCAAACTTATCGTCATTTTGGTTTGCAGAAATTATCAGACTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
62.385 |
97.612 |
0.609 |
| ruvB | Streptococcus pneumoniae TIGR4 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae R6 |
57.975 |
97.313 |
0.564 |
| ruvB | Streptococcus pneumoniae D39 |
57.975 |
97.313 |
0.564 |
| ruvB | Helicobacter pylori 26695 |
54.633 |
93.433 |
0.51 |
| ruvB | Synechocystis sp. PCC 6803 |
55.016 |
92.239 |
0.507 |